Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000576`

染色体: Chr05 坐标: 4333173-4341042 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000576`
名称	SmilChr05G000576
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4333173 - 4341042 / `-`

ID 对照

NCBI Gene ID	`LOC130985233`
GeneID	`130985233`
locus_tag	`-`
NCBI Name	`LOC130985233`
原始查询	`LOC130985233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
产物	alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 1-like
Arabidopsis	`AT1G78580` (TPS1) trehalose-6-phosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:844194] identity=73.8; qcov=1.04; evalue=0; confidence=high
Rice	`Os05g0518600` (OsTPS1) - identity=77.2; qcov=0.934; evalue=0; confidence=high
GO	GO:0003825 (alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity); GO:0005829 (cytosol); GO:0005992 (trehalose biosynthetic process); GO:0070413 (GO:0070413)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00982 (Glyco_transf_20); PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:130985233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764057.1`
2	Cytosol	细胞质基质	0.40000	`XP_057764059.1`
3	Nucleus	细胞核	0.00000	`XP_057764057.1`
4	Chromosome	染色体	0.00000	`XP_057764057.1`
5	Centromere	着丝粒	0.00000	`XP_057764057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4333695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:4333707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B114,B122,D11
`Chr5:4333866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B7,B79,C27
`Chr5:4333917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C44
`Chr5:4334363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B14,B55
`Chr5:4334377`	`CCT`	`C`	2bp_deletion	frameshift_variant	4	B14,B55,C40,D2
`Chr5:4334377`	`CCT`	`C`	2bp_deletion	CDS_variant	4	B14,B55,C40,D2
`Chr5:4334381`	`C`	`CTA`	2bp_insertion	frameshift_variant	5	B14,B55,C40,D2,D9
`Chr5:4334381`	`C`	`CTA`	2bp_insertion	CDS_variant	5	B14,B55,C40,D2,D9
`Chr5:4334389`	`G`	`GT`	1bp_insertion	frameshift_variant	5	B14,B55,C40,D2,D9
`Chr5:4334389`	`G`	`GT`	1bp_insertion	CDS_variant	5	B14,B55,C40,D2,D9
`Chr5:4334392`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B14,B55,C40,D2,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764057.1

941 aa

470

941

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 111-576 aa PF02358 Trehalose_PPase 622-830 aa

XP_057764059.1

907 aa

454

907

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 77-542 aa PF02358 Trehalose_PPase 588-796 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764057.1`	Pfam	`PF00982`	Glyco_transf_20	Family	111	576	3.8e-189	630.0	Glycosyltransferase family 20
`XP_057764057.1`	Pfam	`PF02358`	Trehalose_PPase	Family	622	830	5e-61	206.5	Trehalose-phosphatase
`XP_057764059.1`	Pfam	`PF00982`	Glyco_transf_20	Family	77	542	3.5e-189	630.2	Glycosyltransferase family 20
`XP_057764059.1`	Pfam	`PF02358`	Trehalose_PPase	Family	588	796	4.6e-61	206.7	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009088926.1
TTGATTTCCCTTTTGTCGCATAATAATTGAGGAGAGGTTTCTACCTATTTATGTTTGGTTTTGCCAACCTAGCCGTGGCAGAAAATCTGCATGGCGGAATAGTGGGAAAAAGCTGTGCGCCATCATAATCCCTAAGATTCAGTAATCAGATGTATAATCAAGATTTTTTCCTTTATCCTTCTCGGCCACAAAATATCCTCGAAATTTTGCCTACTTGCACTTCGCGTCTCTATGTGGACTGCCACCCTAGCTCAACAAAA...

XM_057908076.1
TGATTTCCCTTTTGTCGCATAATAATTGAGGAGAGGTTTCTACCTATTTATGTTTGGTTTTGCCAACCTAGCCGTGGCAGAAAATCTGCATGGCGGAATAGTGGGAAAAAGCTGTGCGCCATCATAATCCCTAAGATTCAGTAATCAGATGTATAATCAAGATTTTTTCCTTTATCCTTCTCGGCCACAAAATATCCTCGAAATTTTGCCTACTTGCACTTCGCGTCTCTATGTGGACTGCCACCCTAGCTCAACAAAAA...

CDS

2 records

下载 CDS FASTA

LOC130985233
ATGGGATCATCTCAAGACACCACCAATTTGGTTGATGCACAAGCGACTCGTACGCAGGAGAACCATTGCAACTCTGGTCCCTCAATACCCACAAGTAGACTAGAAAGGCTTTTGAGAGAAAGAGTGTTAAGAAGGGGCTACCAAGATGAAGATTTTTTTGAAGGGAATGCTTTAGTAAAACATCTAACAGATGGCTCTGAGAAACAGGATGTTCGAGTCCCCAAACAGAGGTTACTGGTGGTGGCGAATCGACTGCCAGT...

LOC130985233
ATGGGATCATCTCAAGACACCACCAATTTGGTTGATGCACAAGCGACTCGTACGCAGGAGAACCATTGCAACTCTGGTCCCTCAATACCCACAAGTAGACTAGAAAGGCTTTTGAGAGAAAGAGTGTTAAGAAGGTCCAGCAAGTCTTATCACTCTCTTGAAGAATCAAGAGATAGTAATGGGGATCTGGACATTTCTGGAAATTCAAATGACCTATATCTCTCTGATGGTGACAGGGGCTACCAAGATGAAGATTTTTT...

Protein

2 records

下载 Protein FASTA

XP_057764057.1
MGSSQDTTNLVDAQATRTQENHCNSGPSIPTSRLERLLRERVLRRSSKSYHSLEESRDSNGDLDISGNSNDLYLSDGDRGYQDEDFFEGNALVKHLTDGSEKQDVRVPKQRLLVVANRLPVSAIRKDDDSWGLEVSVGGLVSALLGINEFEARWIGWAGVNVPDEVGQRSLTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKEANQMFADVVNEHYREGDVVWCHDYHLMF...

XP_057764059.1
MGSSQDTTNLVDAQATRTQENHCNSGPSIPTSRLERLLRERVLRRGYQDEDFFEGNALVKHLTDGSEKQDVRVPKQRLLVVANRLPVSAIRKDDDSWGLEVSVGGLVSALLGINEFEARWIGWAGVNVPDEVGQRSLTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKEANQMFADVVNEHYREGDVVWCHDYHLMFLPKCLKDYNSKMKVGWFLHTPFPSSEIHRTLPSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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