Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002628`

染色体: Chr01 坐标: 44571129-44591817 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002628`
名称	SmilChr01G002628
描述	protein unc-13 homolog
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44571129 - 44591817 / `+`

ID 对照

NCBI Gene ID	`LOC130985239`
GeneID	`130985239`
locus_tag	`-`
NCBI Name	`LOC130985239`
原始查询	`LOC130985239`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein unc-13 homolog
产物	protein unc-13 homolog
Arabidopsis	`AT4G11670` (AT4G11670) DNA topoisomerase 4 subunit B (DUF810) [Source:NCBI gene (formerly Entrezgene);Acc:826772] identity=48.6; qcov=1; evalue=0; confidence=high
Rice	`Os09g0346700` (P0512H04.9-1) - identity=27.2; qcov=0.925; evalue=3.71e-103; confidence=low
GO	-
KEGG	-
Pfam	PF25761 (TPR_PATROL1); PF27629 (UNC13_3rd); PF27630 (UNC13_N)
InterPro	-
eggNOG	-
NR	GeneID:130985239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057764108.1`
2	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057764108.1`
3	Cytoplasm	细胞质	0.40000	`XP_057764070.1`
4	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057764108.1`
5	Golgi apparatus	高尔基体	0.40000	`XP_057764108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44571890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:44573090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B13,B24,B68,C42
`Chr1:44573165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B121
`Chr1:44576506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:44578998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B70,C28,C65
`Chr1:44579278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B26,B80,C38,C60
`Chr1:44580956`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B4,B41,C26,C36,C46
`Chr1:44580956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B4,B41,C26,C36,C46
`Chr1:44581019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B26,B80,C38,C60
`Chr1:44581053`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D5
`Chr1:44581053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr1:44585215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764070.1

1131 aa

566

1131

UNC13_N

UNC13_3rd

TPR_PATROL1

PF27630 UNC13_N 7-70 aa PF27629 UNC13_3rd 411-519 aa PF25761 TPR_PATROL1 676-1080 aa

XP_057764080.1

1130 aa

565

1130

UNC13_N

UNC13_3rd

TPR_PATROL1

PF27630 UNC13_N 7-70 aa PF27629 UNC13_3rd 411-519 aa PF25761 TPR_PATROL1 675-1079 aa

XP_057764089.1

1117 aa

558

1117

UNC13_N

UNC13_3rd

TPR_PATROL1

PF27630 UNC13_N 7-70 aa PF27629 UNC13_3rd 411-519 aa PF25761 TPR_PATROL1 662-1066 aa

XP_057764098.1

1056 aa

528

1056

UNC13_3rd

TPR_PATROL1

PF27629 UNC13_3rd 336-444 aa PF25761 TPR_PATROL1 601-1005 aa

XP_057764108.1

953 aa

476

953

UNC13_3rd

TPR_PATROL1

PF27629 UNC13_3rd 233-341 aa PF25761 TPR_PATROL1 498-902 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764070.1`	Pfam	`PF27630`	UNC13_N	Domain	7	70	5.3e-29	100.5	UNC13 N-terminal domain
`XP_057764070.1`	Pfam	`PF27629`	UNC13_3rd	Domain	411	519	2.5e-38	131.7	UNC13 third domain
`XP_057764070.1`	Pfam	`PF25761`	TPR_PATROL1	Repeat	676	1080	1.7e-105	353.9	PATROL1-like, TPR repeats
`XP_057764080.1`	Pfam	`PF27630`	UNC13_N	Domain	7	70	5.2e-29	100.5	UNC13 N-terminal domain
`XP_057764080.1`	Pfam	`PF27629`	UNC13_3rd	Domain	411	519	2.5e-38	131.6	UNC13 third domain
`XP_057764080.1`	Pfam	`PF25761`	TPR_PATROL1	Repeat	675	1079	1.7e-105	353.9	PATROL1-like, TPR repeats
`XP_057764089.1`	Pfam	`PF27630`	UNC13_N	Domain	7	70	5.2e-29	100.5	UNC13 N-terminal domain
`XP_057764089.1`	Pfam	`PF27629`	UNC13_3rd	Domain	411	519	2.5e-38	131.7	UNC13 third domain
`XP_057764089.1`	Pfam	`PF25761`	TPR_PATROL1	Repeat	662	1066	1.7e-105	354.0	PATROL1-like, TPR repeats
`XP_057764098.1`	Pfam	`PF27629`	UNC13_3rd	Domain	336	444	2.2e-38	131.9	UNC13 third domain
`XP_057764098.1`	Pfam	`PF25761`	TPR_PATROL1	Repeat	601	1005	1.5e-105	354.2	PATROL1-like, TPR repeats
`XP_057764108.1`	Pfam	`PF27629`	UNC13_3rd	Domain	233	341	1.8e-38	132.1	UNC13 third domain
`XP_057764108.1`	Pfam	`PF25761`	TPR_PATROL1	Repeat	498	902	1.2e-105	354.5	PATROL1-like, TPR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057908087.1
ATGGTCGCCTTTTCGCGCTACTCGAAAAATAGAAAAAAAGTAAAAGGCAAAATACGAAAATGTCTTCGTTGCAATAAACTAATAATTGACACACTGAGACTTTGTGCTTTCTCATTGTTCAAACCGAAGCAAATTTCTCTGCTATGTGAAAACTGGAATTTCGATGGAGTTCTCGAATGGTTTATTGCGGCGCTATCGCGACGATCGCCGCAAGCTACTGGAGTTCCTCTTGTCGTCCGGCCTCATCAAAGAAATCACCA...

XM_057908097.1
GTAAAAGGCAAAATACGAAAATGTCTTCGTTGCAATAAACTAATAATTGACACACTGAGACTTTGTGCTTTCTCATTGTTCAAACCGAAGCAAATTTCTCTGCTATGTGAAAACTGGAATTTCGATGGAGTTCTCGAATGGTTTATTGCGGCGCTATCGCGACGATCGCCGCAAGCTACTGGAGTTCCTCTTGTCGTCCGGCCTCATCAAAGAAATCACCACTCCGGCGGATATCGAATTCGATCATCTCAGCGCTGATT...

CDS

5 records

下载 CDS FASTA

LOC130985239
ATGGAGTTCTCGAATGGTTTATTGCGGCGCTATCGCGACGATCGCCGCAAGCTACTGGAGTTCCTCTTGTCGTCCGGCCTCATCAAAGAAATCACCACTCCGGCGGATATCGAATTCGATCATCTCAGCGCTGATTACGTTCTCGAATGCATTCACTCCGGTGGCGTGCTTGACGTTTCTCAAGCAACAAGGAGGTATCATGATGAGTCTTCACATCCAATAGCGATGCACTTGCAATCGGGAGATGTTTTTTACCTTCT...

Protein

5 records

下载 Protein FASTA

XP_057764070.1
MEFSNGLLRRYRDDRRKLLEFLLSSGLIKEITTPADIEFDHLSADYVLECIHSGGVLDVSQATRRYHDESSHPIAMHLQSGDVFYLLSGTESAGSPPRRVPPPIAMNRKVNEKGDFVERHNSAERSHISSQETGINCQENTAPCVHNTIVRLVGLPNLRTGLRDDDLRETAYEVFLACMLFSGLEIHSTEGRKREKSSKFLSGLKNRKDKRHIESAPIESHLKVLDTIRLQMQISEAADAFIRRRLTQFVMGKACAQIDV...

XP_057764080.1
MEFSNGLLRRYRDDRRKLLEFLLSSGLIKEITTPADIEFDHLSADYVLECIHSGGVLDVSQATRRYHDESSHPIAMHLQSGDVFYLLSGTESAGSPPRRVPPPIAMNRKVNEKGDFVERHNSAERSHISSQETGINCQENTAPCVHNTIVRLVGLPNLRTGLRDDDLRETAYEVFLACMLFSGLEIHSTEGRKREKSSKFLSGLKNRKDKRHIESAPIESHLKVLDTIRLQMQISEAADAFIRRRLTQFVMGKACAQIDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器