Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000604

染色体: Chr05 坐标: 4549612-4554739 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000604
名称SmilChr05G000604
描述uncharacterized SmilChr05G000604
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向4549612 - 4554739 / +

ID 对照

NCBI Gene IDLOC130985248
GeneID130985248
locus_tag-
NCBI NameLOC130985248
原始查询LOC130985248

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述RING/FYVE/PHD-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:839858]; symbol=AT1G29800; hit=AT1G29800; species=arabidopsis; confidence=high
产物RING/FYVE/PHD-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:839858]; symbol=AT1G29800; hit=AT1G29800; species=arabidopsis; confidence=high
ArabidopsisAT1G29800 (AT1G29800)
RING/FYVE/PHD-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:839858]
identity=72.6; qcov=0.759; evalue=0; confidence=high
RiceOs02g0233100
-
identity=61.5; qcov=0.782; evalue=0; confidence=high
GOGO:0035091 (phosphatidylinositol binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF01363 (FYVE); PF04366 (Ysc84)
InterPro-
eggNOG-
NRGeneID:130985248

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.80000 XP_057764085.1
2 Trans-golgi network Trans-golgi network 0.60000 XP_057764085.1
3 Endosome 内体 0.60000 XP_057764085.1
4 Endosome membrane 内体膜 0.40000 XP_057764085.1
5 Cytoplasm 细胞质 0.20000 XP_057764090.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:4552143 C T EMS_canonical_SNV CDS_variant 4 B107,B51,B87,B88
Chr5:4552262 G A EMS_canonical_SNV CDS_variant 4 B107,B51,B87,B88
Chr5:4552338 G A EMS_canonical_SNV CDS_variant 1 C59
Chr5:4552353 C T EMS_canonical_SNV CDS_variant 4 A6,B105,B74,C52
Chr5:4552376 G A EMS_canonical_SNV CDS_variant 1 B108
Chr5:4552492 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:4552597 C T EMS_canonical_SNV CDS_variant 1 B100
Chr5:4552629 C T EMS_canonical_SNV CDS_variant 1 D11
Chr5:4552662 G A EMS_canonical_SNV CDS_variant 1 C48
Chr5:4552734 A AGG 2bp_insertion frameshift_variant 4 B115,B58,B65,D3
Chr5:4552734 A AGG 2bp_insertion CDS_variant 4 B115,B58,B65,D3
Chr5:4552737 AAT A 2bp_deletion frameshift_variant 4 B115,B58,B65,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764085.1
628 aa
N
1
314
628
FYVE
Ysc84
C
PF01363 FYVE 315-381 aa PF04366 Ysc84 496-621 aa
XP_057764086.1
628 aa
N
1
314
628
FYVE
Ysc84
C
PF01363 FYVE 315-381 aa PF04366 Ysc84 496-621 aa
XP_057764087.1
628 aa
N
1
314
628
FYVE
Ysc84
C
PF01363 FYVE 315-381 aa PF04366 Ysc84 496-621 aa
XP_057764088.1
628 aa
N
1
314
628
FYVE
Ysc84
C
PF01363 FYVE 315-381 aa PF04366 Ysc84 496-621 aa
XP_057764090.1
582 aa
N
1
291
582
FYVE
Ysc84
C
PF01363 FYVE 269-335 aa PF04366 Ysc84 450-575 aa
XP_057764091.1
582 aa
N
1
291
582
FYVE
Ysc84
C
PF01363 FYVE 269-335 aa PF04366 Ysc84 450-575 aa
XP_057764092.1
582 aa
N
1
291
582
FYVE
Ysc84
C
PF01363 FYVE 269-335 aa PF04366 Ysc84 450-575 aa
XP_057764093.1
582 aa
N
1
291
582
FYVE
Ysc84
C
PF01363 FYVE 269-335 aa PF04366 Ysc84 450-575 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764085.1 Pfam PF01363 FYVE Domain 315 381 3.2e-17 63.1 FYVE zinc finger
XP_057764085.1 Pfam PF04366 Ysc84 Family 496 621 3.8e-38 130.8 Las17-binding protein actin regulator
XP_057764086.1 Pfam PF01363 FYVE Domain 315 381 3.2e-17 63.1 FYVE zinc finger
XP_057764086.1 Pfam PF04366 Ysc84 Family 496 621 3.8e-38 130.8 Las17-binding protein actin regulator
XP_057764087.1 Pfam PF01363 FYVE Domain 315 381 3.2e-17 63.1 FYVE zinc finger
XP_057764087.1 Pfam PF04366 Ysc84 Family 496 621 3.8e-38 130.8 Las17-binding protein actin regulator
XP_057764088.1 Pfam PF01363 FYVE Domain 315 381 3.2e-17 63.1 FYVE zinc finger
XP_057764088.1 Pfam PF04366 Ysc84 Family 496 621 3.8e-38 130.8 Las17-binding protein actin regulator
XP_057764090.1 Pfam PF01363 FYVE Domain 269 335 2.9e-17 63.2 FYVE zinc finger
XP_057764090.1 Pfam PF04366 Ysc84 Family 450 575 4.2e-38 130.7 Las17-binding protein actin regulator
XP_057764091.1 Pfam PF01363 FYVE Domain 269 335 2.9e-17 63.2 FYVE zinc finger
XP_057764091.1 Pfam PF04366 Ysc84 Family 450 575 4.2e-38 130.7 Las17-binding protein actin regulator
XP_057764092.1 Pfam PF01363 FYVE Domain 269 335 2.9e-17 63.2 FYVE zinc finger
XP_057764092.1 Pfam PF04366 Ysc84 Family 450 575 4.2e-38 130.7 Las17-binding protein actin regulator
XP_057764093.1 Pfam PF01363 FYVE Domain 269 335 2.9e-17 63.2 FYVE zinc finger
XP_057764093.1 Pfam PF04366 Ysc84 Family 450 575 4.2e-38 130.7 Las17-binding protein actin regulator

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057908102.1
TAAATAAAATCGAGGGCGCTTATCTCATGCAGGTCGTGCTCAGGAGTTGTAAATTACCTCAGACCACTGAATTGCCGCGTAATCAAACACAACAGAACAACATTTAGAACAATAGCAACAACCTGAAGGAAAGTTCACAGCATGTGATGTTGCACTGCTTGCTAGTATTCAATGATGAGGTGCTAATTTCTCATAGAGATTACTATAATTGTATTCATTAGTAACACAAAAGCCTGCCCACATACAAATGCCCCACCAGC...
XM_057908103.1
TATTTAATAAACCAAACACGGCATCAACTTTCGACGTCATCATAAATTATTCTCAGAGATATGTATTGACTACCAAAAGATCGAAAATTTTAGTTTCGATTAGTATGCTGGAGCTGTGAAATTCTTATCGATCGAGTTTCGAAGCTTTTCTGAACGTGAAATTGGGCGTTTGAAAGCTAGGGGTCTGATTCCTTTCTTCAGATTATGCTGATTGCTGACATTGCTGTATCATCCGAGTAAAAGAGTGGTACTTTCTAAAC...

CDS

8 records

下载 CDS FASTA
LOC130985248
ATGGATTCCCATGGAACAAGTGATCTTGAATTAAATAACCTCCATGAGGAGAATATTACAGGTAACAGAAGCTCCATTATCCCATCTGAAGAAAGTGTATCTGACTTTTCTTCTAAGCAAGAAAACCAGGAAAGTAATATGAAAGTGAGTCCTATGAGCCAACACGATGAGTTGGCTGAAAATCTAACGAAGGCCCGTGATAAGGAGAGGAGCTCTATGAGCCAAATTATATCCAATACTGGGCAACTTGACAGCAAGTA...
LOC130985248
ATGGATTCCCATGGAACAAGTGATCTTGAATTAAATAACCTCCATGAGGAGAATATTACAGGTAACAGAAGCTCCATTATCCCATCTGAAGAAAGTGTATCTGACTTTTCTTCTAAGCAAGAAAACCAGGAAAGTAATATGAAAGTGAGTCCTATGAGCCAACACGATGAGTTGGCTGAAAATCTAACGAAGGCCCGTGATAAGGAGAGGAGCTCTATGAGCCAAATTATATCCAATACTGGGCAACTTGACAGCAAGTA...

Protein

8 records

下载 Protein FASTA
XP_057764085.1
MDSHGTSDLELNNLHEENITGNRSSIIPSEESVSDFSSKQENQESNMKVSPMSQHDELAENLTKARDKERSSMSQIISNTGQLDSKYSPDEVGQSIYDHSNFQYHDIPSPAVSGDRLPQCAGESNIGNGDPGHQISRTEGCDSSLVVDNDEESTILDPHISTMNISGALSPQNIVADKKGDSVARNCEERKYFYYETPLCEDTGAWIPVSVPPMTENDREEWTRGCCSNGGYIPEEDMGWNQYIGEDKELTMWDVVVEML...
XP_057764086.1
MDSHGTSDLELNNLHEENITGNRSSIIPSEESVSDFSSKQENQESNMKVSPMSQHDELAENLTKARDKERSSMSQIISNTGQLDSKYSPDEVGQSIYDHSNFQYHDIPSPAVSGDRLPQCAGESNIGNGDPGHQISRTEGCDSSLVVDNDEESTILDPHISTMNISGALSPQNIVADKKGDSVARNCEERKYFYYETPLCEDTGAWIPVSVPPMTENDREEWTRGCCSNGGYIPEEDMGWNQYIGEDKELTMWDVVVEML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器