Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000534`

染色体: Chr05 坐标: 4084664-4090359 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000534`
名称	SmilChr05G000534
描述	protein REDUCED WALL ACETYLATION 3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4084664 - 4090359 / `-`

ID 对照

NCBI Gene ID	`LOC130985255`
GeneID	`130985255`
locus_tag	`-`
NCBI Name	`LOC130985255`
原始查询	`LOC130985255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein REDUCED WALL ACETYLATION 3-like
产物	protein REDUCED WALL ACETYLATION 3-like
Arabidopsis	`AT5G46340` (RWA1) O-acetyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834677] identity=78.2; qcov=0.985; evalue=0; confidence=high
Rice	`Os01g0631100` (B1158C05.2-1) - identity=77.1; qcov=0.987; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0009834 (plant-type secondary cell wall biogenesis); GO:0010411 (xyloglucan metabolic process); GO:0016407 (acetyltransferase activity); GO:0045492 (xylan biosynthetic process); GO:1990937 (GO:1990937)
KEGG	-
Pfam	PF07779 (Cas1_AcylT)
InterPro	-
eggNOG	-
NR	GeneID:130985255

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057764107.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057764107.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057764107.1`
4	Nucleus	细胞核	0.00000	`XP_057764107.1`
5	Chromosome	染色体	0.00000	`XP_057764107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4085410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:4085442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B33,C43
`Chr5:4085606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,B98
`Chr5:4085607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:4086139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C25,C32,C68
`Chr5:4086289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C46
`Chr5:4086723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:4086764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C25,C32,C68
`Chr5:4086868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C46
`Chr5:4087175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B56,B96,D8
`Chr5:4087965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:4089024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B45,B66,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764107.1

546 aa

273

546

Cas1_AcylT

PF07779 Cas1_AcylT 102-515 aa

XP_057764109.1

545 aa

272

545

Cas1_AcylT

PF07779 Cas1_AcylT 101-514 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764107.1`	Pfam	`PF07779`	Cas1_AcylT	Family	102	515	1.8e-89	301.5	10 TM Acyl Transferase domain found in Cas1p
`XP_057764109.1`	Pfam	`PF07779`	Cas1_AcylT	Family	101	514	1.8e-89	301.6	10 TM Acyl Transferase domain found in Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908126.1
GAAATAAATAAATATGGTAAATACGCTTAACCAACGCTGACAGTTGGCCTGAAAATAAACGAGACATCTAAACCGACGAAATTTTGTTGAAGCAAACGACGACGTCACACGTCACTCACTGTTTCCGCTCTCTTTCCTTCTACTCCTTCTTGCCTCAGATCTCTGATTGCATATATCTTCTGCTCTTCTCTTCTCTTTATTGATTATTTTTCGAACACAGTGCTGCTGCCATCTGTGCACTTCGTCGTTGCACATTCTCT...

XM_057908124.1
GAAATAAATAAATATGGTAAATACGCTTAACCAACGCTGACAGTTGGCCTGAAAATAAACGAGACATCTAAACCGACGAAATTTTGTTGAAGCAAACGACGACGTCACACGTCACTCACTGTTTCCGCTCTCTTTCCTTCTACTCCTTCTTGCCTCAGATCTCTGATTGCATATATCTTCTGCTCTTCTCTTCTCTTTATTGATTATTTTTCGAACACAGTGCTGCTGCCATCTGTGCACTTCGTCGTTGCACATTCTCT...

CDS

2 records

下载 CDS FASTA

LOC130985255
ATGGCAGTGGATTCTGGACCTCTGACGCCTGGACAGGTGTCATTTTTGCTTGGAGTTATTCCAGTCATTGCAGCATGGATATATTCAGAATGGCTGGAATATAAGAAATCATTGCCGTTCGCCAAAGTCCATTCAGATTATAATTTGGTTCCGTTAGAAAGTCAAACAGTCAAGGAAGATGATCGAGCTGTCTTGATGGAAGGTGGTCTAACAAAATCATCATCCACAAAGACGTCCAGTCCATCTATTAGGACAAACCT...

LOC130985255
ATGGCAGTGGATTCTGGACCTCTGACGCCTGGACAGGTGTCATTTTTGCTTGGAGTTATTCCAGTCATTGCAGCATGGATATATTCAGAATGGCTGGAATATAAGAAATCATTGCCGTTCGCCAAAGTCAGCCATTCAGATTATAATTTGGTTCCGTTAGAAAGTCAAACAGTCAAGGAAGATGATCGAGCTGTCTTGATGGAAGGTGGTCTAACAAAATCATCATCCACAAAGACGTCCAGTCCATCTATTAGGACAAA...

Protein

2 records

下载 Protein FASTA

XP_057764107.1
MAVDSGPLTPGQVSFLLGVIPVIAAWIYSEWLEYKKSLPFAKVSHSDYNLVPLESQTVKEDDRAVLMEGGLTKSSSTKTSSPSIRTNLIRFLLMDDLFLLENRKVLRAMAEFGGILFYFYLCDRTNFFADSTKSYNRDLFIFLYLLLVIASAMTSLKKHNDKSPISGKSILYLNRHQTEEWKGYMQVLFLMYHYFAASEIYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSVARFAQMMWRLNFFVAFCCIVLNNDYMLYY...

XP_057764109.1
MAVDSGPLTPGQVSFLLGVIPVIAAWIYSEWLEYKKSLPFAKVHSDYNLVPLESQTVKEDDRAVLMEGGLTKSSSTKTSSPSIRTNLIRFLLMDDLFLLENRKVLRAMAEFGGILFYFYLCDRTNFFADSTKSYNRDLFIFLYLLLVIASAMTSLKKHNDKSPISGKSILYLNRHQTEEWKGYMQVLFLMYHYFAASEIYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSVARFAQMMWRLNFFVAFCCIVLNNDYMLYYI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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