Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002629`

染色体: Chr01 坐标: 44595226-44600028 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002629`
名称	SmilChr01G002629
描述	putative F-box protein At3g52320
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44595226 - 44600028 / `+`

ID 对照

NCBI Gene ID	`LOC130985260`
GeneID	`130985260`
locus_tag	`-`
NCBI Name	`LOC130985260`
原始查询	`LOC130985260`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative F-box protein At3g52320
产物	putative F-box protein At3g52320
Arabidopsis	`AT3G07870` (AT3G07870) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978] identity=26.3; qcov=1.03; evalue=6.08e-17; confidence=low
Rice	`Os12g0128000` (OsFbox638) - identity=25.4; qcov=1.08; evalue=1.77e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:130985260

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764120.1`
2	Nucleus	细胞核	0.80000	`XP_057764120.1`
3	Cytosol	细胞质基质	0.20000	`XP_057764120.1`
4	Chromosome	染色体	0.00000	`XP_057764120.1`
5	Centromere	着丝粒	0.00000	`XP_057764120.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44599079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:44599103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:44599204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B70,C28,C65
`Chr1:44599242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C9
`Chr1:44599512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:44599530`	`C`	`T`	EMS_canonical_SNV	stop_gained	30	A14,A18,A19,A22,A24,B102,B109,B120,B125,B134,B36,B45,B62,B64,B81,B83,B87,B95,C1,C12,C24,C27,C30,C45,C53,C54,C59,C63,C9,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764120.1

404 aa

202

404

F-box-like

F-box

b-prop_At3g26010-like

FBA_3

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF24750 b-prop_At3g26010-like 97-260 aa PF08268 FBA_3 97-375 aa PF07734 FBA_1 114-363 aa

XP_057764128.1

404 aa

202

404

F-box-like

F-box

b-prop_At3g26010-like

FBA_3

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF24750 b-prop_At3g26010-like 97-260 aa PF08268 FBA_3 97-375 aa PF07734 FBA_1 114-363 aa

XP_057764135.1

404 aa

202

404

F-box-like

F-box

b-prop_At3g26010-like

FBA_3

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF24750 b-prop_At3g26010-like 97-260 aa PF08268 FBA_3 97-375 aa PF07734 FBA_1 114-363 aa

XP_057764144.1

404 aa

202

404

F-box-like

F-box

b-prop_At3g26010-like

FBA_3

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF24750 b-prop_At3g26010-like 97-260 aa PF08268 FBA_3 97-375 aa PF07734 FBA_1 114-363 aa

XP_057764152.1

371 aa

186

371

F-box-like

F-box

FBA_3

b-prop_At3g26010-like

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 67-342 aa PF24750 b-prop_At3g26010-like 77-227 aa PF07734 FBA_1 81-330 aa

XP_057764159.1

371 aa

186

371

F-box-like

F-box

FBA_3

b-prop_At3g26010-like

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 67-342 aa PF24750 b-prop_At3g26010-like 77-227 aa PF07734 FBA_1 81-330 aa

XP_057764166.1

371 aa

186

371

F-box-like

F-box

FBA_3

b-prop_At3g26010-like

FBA_1

PF12937 F-box-like 6-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 67-342 aa PF24750 b-prop_At3g26010-like 77-227 aa PF07734 FBA_1 81-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764120.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	2e-08	34.6	F-box-like
`XP_057764120.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.5e-09	38.1	F-box domain
`XP_057764120.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	97	260	2.9e-06	27.3	F-box protein At3g26010-like, beta-propeller
`XP_057764120.1`	Pfam	`PF08268`	FBA_3	Repeat	97	375	2.7e-24	86.4	F-box associated beta propeller domain
`XP_057764120.1`	Pfam	`PF07734`	FBA_1	Repeat	114	363	5e-22	79.0	F-box associated beta propeller domain
`XP_057764128.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	2e-08	34.6	F-box-like
`XP_057764128.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.5e-09	38.1	F-box domain
`XP_057764128.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	97	260	2.9e-06	27.3	F-box protein At3g26010-like, beta-propeller
`XP_057764128.1`	Pfam	`PF08268`	FBA_3	Repeat	97	375	2.7e-24	86.4	F-box associated beta propeller domain
`XP_057764128.1`	Pfam	`PF07734`	FBA_1	Repeat	114	363	5e-22	79.0	F-box associated beta propeller domain
`XP_057764135.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	2e-08	34.6	F-box-like
`XP_057764135.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.5e-09	38.1	F-box domain
`XP_057764135.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	97	260	2.9e-06	27.3	F-box protein At3g26010-like, beta-propeller
`XP_057764135.1`	Pfam	`PF08268`	FBA_3	Repeat	97	375	2.7e-24	86.4	F-box associated beta propeller domain
`XP_057764135.1`	Pfam	`PF07734`	FBA_1	Repeat	114	363	5e-22	79.0	F-box associated beta propeller domain
`XP_057764144.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	2e-08	34.6	F-box-like
`XP_057764144.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.5e-09	38.1	F-box domain
`XP_057764144.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	97	260	2.9e-06	27.3	F-box protein At3g26010-like, beta-propeller
`XP_057764144.1`	Pfam	`PF08268`	FBA_3	Repeat	97	375	2.7e-24	86.4	F-box associated beta propeller domain
`XP_057764144.1`	Pfam	`PF07734`	FBA_1	Repeat	114	363	5e-22	79.0	F-box associated beta propeller domain
`XP_057764152.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	1.8e-08	34.8	F-box-like
`XP_057764152.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.3e-09	38.3	F-box domain
`XP_057764152.1`	Pfam	`PF08268`	FBA_3	Repeat	67	342	1.8e-24	87.0	F-box associated beta propeller domain
`XP_057764152.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	77	227	5.7e-06	26.4	F-box protein At3g26010-like, beta-propeller
`XP_057764152.1`	Pfam	`PF07734`	FBA_1	Repeat	81	330	2.2e-22	80.2	F-box associated beta propeller domain
`XP_057764159.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	1.8e-08	34.8	F-box-like
`XP_057764159.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.3e-09	38.3	F-box domain
`XP_057764159.1`	Pfam	`PF08268`	FBA_3	Repeat	67	342	1.8e-24	87.0	F-box associated beta propeller domain
`XP_057764159.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	77	227	5.7e-06	26.4	F-box protein At3g26010-like, beta-propeller
`XP_057764159.1`	Pfam	`PF07734`	FBA_1	Repeat	81	330	2.2e-22	80.2	F-box associated beta propeller domain
`XP_057764166.1`	Pfam	`PF12937`	F-box-like	Domain	6	43	1.8e-08	34.8	F-box-like
`XP_057764166.1`	Pfam	`PF00646`	F-box	Domain	7	45	1.3e-09	38.3	F-box domain
`XP_057764166.1`	Pfam	`PF08268`	FBA_3	Repeat	67	342	1.8e-24	87.0	F-box associated beta propeller domain
`XP_057764166.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	77	227	5.7e-06	26.4	F-box protein At3g26010-like, beta-propeller
`XP_057764166.1`	Pfam	`PF07734`	FBA_1	Repeat	81	330	2.2e-22	80.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057908145.1
AAAAGTGGGCTCTAGAGAATGTTGCTGCGGGTTGGCCTCTAAATTGGGCTCTCAACTTTTATATTTGCAAATTACAACTGAACTAAAACCTTTGAGCAAAATGAAGTTGTTCCAGTTCCCACACGATCAAGTTAGGGGAAGTCGAAATCAAACCCGTATCATCTCCACCCAAATATTGCGGTGGATTTTCTGTTATTGGGCGAAGAAAACAGTTGTATTCTCGTCAATCGTATTTTGGTTGCTTTGCTTTGTGGCAGAAA...

XM_057908137.1
GCGGGTTGGCCTCTAAATTGGGCTCTCAACTTTTATATTTGCAAATTACAACTGAACTAAAACCTTTGAGCAAAATGAAGTTGTTCCAGTTCCCACACGATCAAGTTAGGGGAAGTCGAAATCAAACCCGTATCATCTCCACCCAAATATTGCGGTGGATTTTCTGTTATTGGGCGAAGAAAACAGTTGTATTCTCGTCAATCGTATTTTGGTTGCTTTGCTTTGTGGCAGAAATTAGGAATGAGCCTTCAGTTATATGT...

CDS

7 records

下载 CDS FASTA

LOC130985260
ATGGCAGGGTCTCTCGCCGAGCTACCTCCAAACATCCTCTCAGAGATCCTCTCAAGGCTTCCCATCAAGAGCCTCGTTGCATGCAGAACTGTATGCAAGACCTTTCTTGATATAACATCCTCCAATCCATTCTTCAACTCTCTGCATTCATCAAAGACGGCCCCAAATCTCATAATCCAGTTAGGAAGCGTCCACAACCCTACAAGGTTAGTCCATTTGGTTGAATCTGGACTAGATACTGCATTTATGTCCGGTGGGAT...

Protein

7 records

下载 Protein FASTA

XP_057764120.1
MAGSLAELPPNILSEILSRLPIKSLVACRTVCKTFLDITSSNPFFNSLHSSKTAPNLIIQLGSVHNPTRLVHLVESGLDTAFMSGGIAELKLMFRIPNYPSRYFERYHVHTGEENNFVLVNSCDGLLYFAERDVCERSFVCNPIMKEYLTLPEFDKERNRRQLTMGSWFGFSVGDNQYKVLRIFSTLTGRPWEIGFKQEFWAQVHVVGSSLWRDIANQPPSEYLTWDTCFTLLNGTVYWLCRYPELSKFIIFFDFHQEKF...

XP_057764128.1
MAGSLAELPPNILSEILSRLPIKSLVACRTVCKTFLDITSSNPFFNSLHSSKTAPNLIIQLGSVHNPTRLVHLVESGLDTAFMSGGIAELKLMFRIPNYPSRYFERYHVHTGEENNFVLVNSCDGLLYFAERDVCERSFVCNPIMKEYLTLPEFDKERNRRQLTMGSWFGFSVGDNQYKVLRIFSTLTGRPWEIGFKQEFWAQVHVVGSSLWRDIANQPPSEYLTWDTCFTLLNGTVYWLCRYPELSKFIIFFDFHQEKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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