Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000545`

染色体: Chr05 坐标: 4157974-4162989 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000545`
名称	SmilChr05G000545
描述	uncharacterized SmilChr05G000545
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4157974 - 4162989 / `-`

ID 对照

NCBI Gene ID	`LOC130985261`
GeneID	`130985261`
locus_tag	`-`
NCBI Name	`LOC130985261`
原始查询	`LOC130985261`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SCP1-like small phosphatase 4 [Source:NCBI gene (formerly Entrezgene);Acc:834684]; symbol=SSP4; hit=AT5G46410; species=arabidopsis; confidence=medium
产物	SCP1-like small phosphatase 4 [Source:NCBI gene (formerly Entrezgene);Acc:834684]; symbol=SSP4; hit=AT5G46410; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G46410` (SSP4) SCP1-like small phosphatase 4 [Source:NCBI gene (formerly Entrezgene);Acc:834684] identity=43.4; qcov=1.02; evalue=8.17e-120; confidence=medium
Rice	`Os01g0665300` (P0003E08.20-1) - identity=60.5; qcov=0.465; evalue=1.02e-89; confidence=medium
GO	GO:0004721 (phosphoprotein phosphatase activity)
KEGG	-
Pfam	PF03031 (NIF)
InterPro	-
eggNOG	-
NR	GeneID:130985261

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764119.1`
2	Cytoplasm	细胞质	0.80000	`XP_057764118.1`
3	Cytosol	细胞质基质	0.60000	`XP_057764118.1`
4	Chromosome	染色体	0.00000	`XP_057764118.1`
5	Centromere	着丝粒	0.00000	`XP_057764118.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4159387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:4159723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr5:4159950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B33,C43
`Chr5:4160575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr5:4160612`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B118
`Chr5:4160612`	`TC`	`T`	1bp_deletion	CDS_variant	1	B118
`Chr5:4161049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:4161854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764118.1

484 aa

242

484

NIF

PF03031 NIF 313-473 aa

XP_057764119.1

480 aa

240

480

NIF

PF03031 NIF 309-469 aa

XP_057764121.1

484 aa

242

484

NIF

PF03031 NIF 313-473 aa

XP_057764122.1

480 aa

240

480

NIF

PF03031 NIF 309-469 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764118.1`	Pfam	`PF03031`	NIF	Family	313	473	1e-54	185.2	NLI interacting factor-like phosphatase
`XP_057764119.1`	Pfam	`PF03031`	NIF	Family	309	469	1.3e-54	185.0	NLI interacting factor-like phosphatase
`XP_057764121.1`	Pfam	`PF03031`	NIF	Family	313	473	1e-54	185.2	NLI interacting factor-like phosphatase
`XP_057764122.1`	Pfam	`PF03031`	NIF	Family	309	469	1.3e-54	185.0	NLI interacting factor-like phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908138.1
CTCAAACTCATGCATCACACAGTTGTACATTTAGACGGAGAAAGGGCTAAGGTCAATCAATTTATTTTCAAGAGTGCACCTTATTAAGCTACTGATAGAAGATGGTTTAGGAAGCGCGATTGTAGAGAATCAGGAAAGGAGCAGACTTTACAGCACGGCCCAGCCAACCGAGTATAAAATTACGCGCAGAGGAGCGAAAATCTAGAGAGAGAAAGCGCGTCCCTTTAGAGAGAGAGAGAGGGGGGGAGGAGTTTTGGATT...

XM_057908136.1
TAGGAAGCGCGATTGTAGAGAATCAGGAAAGGAGCAGACTTTACAGCACGGCCCAGCCAACCGAGTATAAAATTACGCGCAGAGGAGCGAAAATCTAGAGAGAGAAAGCGCGTCCCTTTAGAGAGAGAGAGAGGGGGGGAGGAGTTTTGGATTACCACAGATGCTCTCAGTACAATATTGCGATCAGCATCTTACTTGCAGTTCAAATGCCATCATTAAAAATGAAAACAACCACAGGCTGTTTAAAGGAAAAGATAGGT...

CDS

4 records

下载 CDS FASTA

LOC130985261
ATGCCATCATTAAAAATGAAAACAACCACAGGCTGTTTAAAGGAAAAGATAGGTCTTCATGTATGTCGAAAGTCAAGCGTGATATCCAAGAGCCCTCTCTCTCGTGCCAGAACCCCTCAAGATGCAGAAGAAGTTTCTATATGCACTCAAAGCAACCAGGATGTACATGCACGGGATCTTGGAAGAGATGAGGCCAGCCAAGATCTTGGAAGAGATGAGGCCAACAAAGATTCTGGAAGGGATGATGCCAACCATGATAA...

Protein

4 records

下载 Protein FASTA

XP_057764118.1
MPSLKMKTTTGCLKEKIGLHVCRKSSVISKSPLSRARTPQDAEEVSICTQSNQDVHDTVHARDLGRDEASQDLGRDEANKDSGRDDANHDKLSIEDKVFQKQSSIFTDSATKNTEPTSSKCSSNIETIFSPILESIDLYNNGGSDDLYVPQLDSEDSDDCSRSSCEHQACNISDFYISDMIFSGAPSGNNSQFDNRTDTDFLPDYKFEESSLLCDLTEEYMALPFLEENLDTGHDFDGRPPQETIDPDNSSLYMAIHQLK...

XP_057764119.1
MPSLKMKTTTGCLKEKIGLHVCRKSSVISKSPLSRARTPQDAEEVSICTQSNQDVHARDLGRDEASQDLGRDEANKDSGRDDANHDKLSIEDKVFQKQSSIFTDSATKNTEPTSSKCSSNIETIFSPILESIDLYNNGGSDDLYVPQLDSEDSDDCSRSSCEHQACNISDFYISDMIFSGAPSGNNSQFDNRTDTDFLPDYKFEESSLLCDLTEEYMALPFLEENLDTGHDFDGRPPQETIDPDNSSLYMAIHQLKSCNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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