Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000636`

染色体: Chr05 坐标: 4805864-4809650 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000636`
名称	SmilChr05G000636
描述	two-component response regulator ARR10-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4805864 - 4809650 / `+`

ID 对照

NCBI Gene ID	`LOC130985278`
GeneID	`130985278`
locus_tag	`-`
NCBI Name	`LOC130985278`
原始查询	`LOC130985278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	two-component response regulator ARR10-like
产物	two-component response regulator ARR10-like
Arabidopsis	`AT2G38300` (AT2G38300) myb-like HTH transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:818410] identity=68.2; qcov=0.233; evalue=3.37e-34; confidence=weak
Rice	`Os06g0543200` - identity=54.1; qcov=0.387; evalue=7.8e-35; confidence=low
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:130985278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764162.1`
2	Chromosome	染色体	0.00000	`XP_057764162.1`
3	Centromere	着丝粒	0.00000	`XP_057764162.1`
4	Chromatin	染色质	0.00000	`XP_057764162.1`
5	Telomere	端粒	0.00000	`XP_057764162.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4807796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,B5,C86,C87
`Chr5:4808028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:4808478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:4808871`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C41
`Chr5:4808871`	`AC`	`A`	1bp_deletion	CDS_variant	1	C41
`Chr5:4809208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B110,B2,B23
`Chr5:4809267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764162.1

374 aa

187

374

Myb_DNA-binding

PF00249 Myb_DNA-binding 81-132 aa

XP_057764163.1

377 aa

188

377

Myb_DNA-binding

PF00249 Myb_DNA-binding 81-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764162.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	81	132	7.4e-08	33.1	Myb-like DNA-binding domain
`XP_057764163.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	81	131	5.2e-07	30.4	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908180.1
TTTGTTTTAGGGGAAAGTCACATGATACTCAACAGCCAATGGGGCCCTTCTTCATCTGCATCCATAATTCAAGAATTATTGCATTATTACACACTATAGACAACAAGTGGAGTGTCCGACCATCGTTGAATTTTCATTTTTTCCCCTCTTTAAGAAAGTACAACCCCCCATTTTGCATGAAAGTCTAGGTAAAAATCCCAATATTCTAAAGAAATAGTCGCCTTTGGAATTTATTTCCATTGTTGAATCAAACTGCTAAA...

XM_057908179.1
TTTGTTTTAGGGGAAAGTCACATGATACTCAACAGCCAATGGGGCCCTTCTTCATCTGCATCCATAATTCAAGAATTATTGCATTATTACACACTATAGACAACAAGTGGAGTGTCCGACCATCGTTGAATTTTCATTTTTTCCCCTCTTTAAGAAAGTACAACCCCCCATTTTGCATGAAAGTCTAGGTAAAAATCCCAATATTCTAAAGAAATAGTCGCCTTTGGAATTTATTTCCATTGTTGAATCAAACTGCTAAA...

CDS

2 records

下载 CDS FASTA

LOC130985278
ATGAGTATTAGCGGAGAAGACAACATGGCCTCATCAGATTCATCTGAGAACCTCTCCTCGATCGACTTGAACGAGGAGGCGGGGAGCAATGTAGTTGGCGATCCCATGATTGAAATGTCCGGCATAAGCATTCAAGAAGCGAGAGACGAGAGATCCGGAGACGACAGCTCCAAATCCGAAGATGGCCATGCCAAGGACAAGAAGAATTCAGTTCGCCAATACGTTCGATCCAAAATGCCCAGGCTTAGATGGACTCCTGA...

Protein

2 records

下载 Protein FASTA

XP_057764162.1
MSISGEDNMASSDSSENLSSIDLNEEAGSNVVGDPMIEMSGISIQEARDERSGDDSSKSEDGHAKDKKNSVRQYVRSKMPRLRWTPDLHLSFVHAIERLGGQERATPKAVLQLMNVRGLSISHVKSHLQMYRSKKLDESGRVIGQANRIYIQGRGYLSSSSSAYNEKCSPFHELRMENGGIVFARNHLDCSTPFPQNLKSHHSLSSSRYHPWSSYRHEPKIRVEPGLISEVGTLEKRSISSKYIHALHESYGPLRPSQLL...

XP_057764163.1
MSISGEDNMASSDSSENLSSIDLNEEAGSNVVGDPMIEMSGISIQEARDERSGDDSSKSEDGHAKDKKNSVRQYVRSKMPRLRWTPDLHLSFVHAIERLGGQERATPKAVLQLMNVRGLSISHVKSHLQVHKMYRSKKLDESGRVIGQANRIYIQGRGYLSSSSSAYNEKCSPFHELRMENGGIVFARNHLDCSTPFPQNLKSHHSLSSSRYHPWSSYRHEPKIRVEPGLISEVGTLEKRSISSKYIHALHESYGPLRPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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