当前解析结果
SmilChr05G000503| 统一新 Gene ID | SmilChr05G000503 |
|---|---|
| 名称 | SmilChr05G000503 |
| 描述 | uncharacterized SmilChr05G000503 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3917749 - 3920912 / + |
| NCBI Gene ID | LOC130985297 |
|---|---|
| GeneID | 130985297 |
| locus_tag | - |
| NCBI Name | LOC130985297 |
| 原始查询 | LOC130985297 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832799]; symbol=AT5G27400; hit=AT5G27400; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832799]; symbol=AT5G27400; hit=AT5G27400; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G27400 (AT5G27400)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832799] identity=51.4; qcov=1.07; evalue=3.31e-118; confidence=high |
| Rice | Os03g0243800- identity=26.5; qcov=0.383; evalue=1.08e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF10294 (Methyltransf_16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985297 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764184.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057764184.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057764184.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764184.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764184.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3917860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B139,C15,C9 |
Chr5:3917903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:3917910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr5:3918059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr5:3918068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr5:3918070 |
C |
T |
EMS_canonical_SNV | stop_gained | 62 | A13,A15,A18,A19,A21,A23,A24,B104,B107,B110,B112,B115,B125,B126,B132,B138,B15,B2,B23,B31,B42,B46,B47,B5,B55,B59,B60,B63,B64,B65,B66,B7,B76,B8,B80,B83,B86,B93,B95,C16,C17,C19,C2,C20,C21,C39,C44,C45,C47,C52,C54,C56,C57,C61,C68,C7,C71,C72,C74,C77,C86,D7 |
Chr5:3918086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:3918163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B68,C10 |
Chr5:3918280 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | C64,C66,D1 |
Chr5:3918280 |
T |
TC |
1bp_insertion | CDS_variant | 3 | C64,C66,D1 |
Chr5:3918371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B12,C38,C61 |
Chr5:3918408 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764184.1PF10294
Methyltransf_16 137-279 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764184.1 |
Pfam | PF10294 |
Methyltransf_16 | Family | 137 | 279 | 3.1e-19 | 70.1 | Lysine methyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。