Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002635`

染色体: Chr01 坐标: 44635227-44639956 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002635`
名称	SmilChr01G002635
描述	uncharacterized SmilChr01G002635
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44635227 - 44639956 / `+`

ID 对照

NCBI Gene ID	`LOC130985309`
GeneID	`130985309`
locus_tag	`-`
NCBI Name	`LOC130985309`
原始查询	`LOC130985309`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OSJNBb0058B20.19; symbol=OSJNBb0058B20.19; hit=Os10g0397200; species=rice; confidence=high
产物	OSJNBb0058B20.19; symbol=OSJNBb0058B20.19; hit=Os10g0397200; species=rice; confidence=high
Arabidopsis	`AT4G20330` (AT4G20330) Transcription initiation factor TFIIE, beta subunit [Source:NCBI gene (formerly Entrezgene);Acc:827781] identity=58.3; qcov=0.979; evalue=1.57e-104; confidence=high
Rice	`Os10g0397200` (OSJNBb0058B20.19) - identity=61.3; qcov=0.989; evalue=7.23e-117; confidence=high
GO	GO:0005673 (transcription factor TFIIE complex); GO:0006367 (transcription initiation at RNA polymerase II promoter)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF02186 (TFIIE_beta); PF18121 (TFA2_Winged_2)
InterPro	-
eggNOG	-
NR	GeneID:130985309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764210.1`
2	Nucleoplasm	核质	0.40000	`XP_057764210.1`
3	Nuclear speckle	核斑点	0.20000	`XP_057764210.1`
4	Nucleolus	核仁	0.20000	`XP_057764219.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057764210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44637051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B32,B60
`Chr1:44637259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:44638879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:44639083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B27,B40,C52
`Chr1:44639088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:44639581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,B52,B60,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764210.1

297 aa

148

297

TFIIE_beta

TFA2_Winged_2

PF02186 TFIIE_beta 92-147 aa PF18121 TFA2_Winged_2 150-206 aa

XP_057764219.1

282 aa

141

282

TFIIE_beta

TFA2_Winged_2

PF02186 TFIIE_beta 77-132 aa PF18121 TFA2_Winged_2 135-191 aa

XP_057764228.1

282 aa

141

282

TFIIE_beta

TFA2_Winged_2

PF02186 TFIIE_beta 77-132 aa PF18121 TFA2_Winged_2 135-191 aa

XP_057764237.1

282 aa

141

282

TFIIE_beta

TFA2_Winged_2

PF02186 TFIIE_beta 77-132 aa PF18121 TFA2_Winged_2 135-191 aa

XP_057764245.1

282 aa

141

282

TFIIE_beta

TFA2_Winged_2

PF02186 TFIIE_beta 77-132 aa PF18121 TFA2_Winged_2 135-191 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764210.1`	Pfam	`PF02186`	TFIIE_beta	Domain	92	147	6.7e-07	30.2	TFIIE beta subunit core domain
`XP_057764210.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	150	206	1.3e-15	57.5	TFA2 Winged helix domain 2
`XP_057764219.1`	Pfam	`PF02186`	TFIIE_beta	Domain	77	132	5.9e-07	30.3	TFIIE beta subunit core domain
`XP_057764219.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	135	191	1.2e-15	57.6	TFA2 Winged helix domain 2
`XP_057764228.1`	Pfam	`PF02186`	TFIIE_beta	Domain	77	132	5.9e-07	30.3	TFIIE beta subunit core domain
`XP_057764228.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	135	191	1.2e-15	57.6	TFA2 Winged helix domain 2
`XP_057764237.1`	Pfam	`PF02186`	TFIIE_beta	Domain	77	132	5.9e-07	30.3	TFIIE beta subunit core domain
`XP_057764237.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	135	191	1.2e-15	57.6	TFA2 Winged helix domain 2
`XP_057764245.1`	Pfam	`PF02186`	TFIIE_beta	Domain	77	132	5.9e-07	30.3	TFIIE beta subunit core domain
`XP_057764245.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	135	191	1.2e-15	57.6	TFA2 Winged helix domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057908236.1
GGAAGAGCCCACTAAACTAACTGGCCCATTCATCTAAATAAATTCTCTATCTCTAATTCATTCTCAAAATTGCCGGCTAAACTCACCAATCCACCACTACTACCGCCAACGCTCTCCCTTATTCCGGCCGACCGACCATCATCAAAATTGGCGCTTTCGCCGCCGTTTACTCGCTCCAACACGAAAGCTCCCTCCGCCACTGCTGCCGTCTTCTGCTCGCCGCCCTCTTATCAGCCTCAACTCAACAACATCAAGAAGCC...

XM_057908245.1
AGCCCACTAAACTAACTGGCCCATTCATCTAAATAAATTCTCTATCTCTAATTCATTCTCAAAATTGCCGGCTAAACTCACCAATCCACCACTACTACCGCCAACGCTCTCCCTTATTCCGGCCGACCGACCATCATCAAAATTGGCGCTTTCGCCGCCGTTTACTCGCTCCAACACGAAAGCTCCCTCCGCCACTGCTGCCGTCTTCTGCTCGCCGCCCTCTTATCAGCCTCAACTCAACAACATCAAGAAGCCCTAAT...

CDS

5 records

下载 CDS FASTA

LOC130985309
ATGGAAACAAAATTTCCCATAAAACCTCCGATCATTTTCTTTGTCATGGCGTCTTCAAAATTTCCGCGACAGCCAGAGAAATCTCAGGCAACACTTGGTACAGCAGCTAAAGCAGGAAATCCTAAAGCAACTTTTTCTAGATCTATGCCCTCAAGCATGTCAAGTTTGGCGAATACAAAGTCTGCTGCAGGTCCAGCCAAATTCTCGGAAAATACAGAACATCTTCAAGAAATAAATAGTATAAGGAAAGCTCCAGTAGG...

LOC130985309
ATGGCGTCTTCAAAATTTCCGCGACAGCCAGAGAAATCTCAGGCAACACTTGGTACAGCAGCTAAAGCAGGAAATCCTAAAGCAACTTTTTCTAGATCTATGCCCTCAAGCATGTCAAGTTTGGCGAATACAAAGTCTGCTGCAGGTCCAGCCAAATTCTCGGAAAATACAGAACATCTTCAAGAAATAAATAGTATAAGGAAAGCTCCAGTAGGGGCCCAGATAAAGCGTGTTATCAACTTGCTCTTTAAGACAAGGGA...

Protein

5 records

下载 Protein FASTA

XP_057764210.1
METKFPIKPPIIFFVMASSKFPRQPEKSQATLGTAAKAGNPKATFSRSMPSSMSSLANTKSAAGPAKFSENTEHLQEINSIRKAPVGAQIKRVINLLFKTREALTPDQINKACYVDVNGNKAVFDSLRNNPKVRYDGERFSYKSKHQLQNKTDLLQLIRTRPEGIAVIDLKDSYTAVLDDLQTLKGTGEIWLLSNFDSQEDIAYPNDPRASITVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAAAEILG...

XP_057764219.1
MASSKFPRQPEKSQATLGTAAKAGNPKATFSRSMPSSMSSLANTKSAAGPAKFSENTEHLQEINSIRKAPVGAQIKRVINLLFKTREALTPDQINKACYVDVNGNKAVFDSLRNNPKVRYDGERFSYKSKHQLQNKTDLLQLIRTRPEGIAVIDLKDSYTAVLDDLQTLKGTGEIWLLSNFDSQEDIAYPNDPRASITVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAAAEILGMPPKPKTKKKKNHEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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