Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000502

染色体: Chr05 坐标: 3914451-3916519 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000502
名称SmilChr05G000502
描述uncharacterized SmilChr05G000502
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向3914451 - 3916519 / -

ID 对照

NCBI Gene IDLOC130985321
GeneID130985321
locus_tag-
NCBI NameLOC130985321
原始查询LOC130985321

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965]; symbol=AT2G43630; hit=AT2G43630; species=arabidopsis; confidence=medium
产物nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965]; symbol=AT2G43630; hit=AT2G43630; species=arabidopsis; confidence=medium
ArabidopsisAT2G43630 (AT2G43630)
nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965]
identity=41.5; qcov=1.03; evalue=1.29e-42; confidence=medium
RiceOs02g0606000 (OsDG2)
-
identity=32.8; qcov=0.803; evalue=1.16e-18; confidence=low
GOGO:0009507 (chloroplast)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985321

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057764230.1
2 Chloroplast membrane 叶绿体膜 0.80000 XP_057764230.1
3 Chloroplast thylakoid 类囊体 0.60000 XP_057764230.1
4 Nucleus 细胞核 0.00000 XP_057764230.1
5 Chromosome 染色体 0.00000 XP_057764230.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:3915007 G A EMS_canonical_SNV CDS_variant 3 B1,C11,C69
Chr5:3915244 GC G 1bp_deletion frameshift_variant 4 A24,B9,C18,C22
Chr5:3915244 GC G 1bp_deletion CDS_variant 4 A24,B9,C18,C22
Chr5:3915245 CT C 1bp_deletion frameshift_variant 16 A25,A9,B115,B125,B17,B22,B64,B91,B92,C30,C49,C6,C70,C73,C84,D7
Chr5:3915286 C T EMS_canonical_SNV CDS_variant 4 B24,B86,C15,C52
Chr5:3915302 C T EMS_canonical_SNV CDS_variant 3 B64,B91,C84
Chr5:3915332 CA C 1bp_deletion frameshift_variant 14 B10,B100,B114,B117,B17,B19,B45,B65,B75,B8,B98,C3,C57,C67
Chr5:3915338 CA C 1bp_deletion frameshift_variant 58 A21,A25,A5,A8,B107,B108,B109,B11,B110,B111,B123,B13,B133,B138,B140,B18,B22,B24,B4,B40,B41,B46,B48,B51,B62,B7,B70,B72,B73,B74,B78,B82,B84,B85,B88,B9,B91,B92,B97,B99,C14,C21,C22,C25,C28,C30,C34,C35,C42,C50,C55,C58,C6,C64,C66,C77,C84,D11
Chr5:3915371 G A EMS_canonical_SNV CDS_variant 1 B86
Chr5:3915609 C T EMS_canonical_SNV CDS_variant 1 C51

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057908249.1
ATGAAATGAGCCCAAACCTTTCAACACATTTAACCTCTCACTCTCTATCTATCTCTACCGAACACTCATTCACAAATTCCGGCGAGAGCCGCCGTTCTACAACAACACGCGGCCGCCGACGGCCCTGTTTCTCCCACTGATTTCTCCACCTCACTCGAGACCAGCACAGCCCTCAAGCCGCTGCTATCCTTCCCCTTTTCTTTGGCCGAACATAAATTCAAGTTGTTCCTTCTGAAATTGGGGCGTGACATTTCAGGAAA...
XM_057908247.1
ATGAAATGAGCCCAAACCTTTCAACACATTTAACCTCTCACTCTCTATCTATCTCTACCGAACACTCATTCACAAATTCCGGCGAGAGCCGCCGTTCTACAACAACACGCGGCCGCCGACGGCCCTGTTTCTCCCACTGATTTCTCCACCTCACTCGAGACCAGCACAGCCCTCAAGCCGCTGCTATCCTTCCCCTTTTCTTTGGCCGAACATAAATTCAAGTTGTTCCTTCTGAAATTGGGGCGTGACATTTCAGGAAA...

CDS

3 records

下载 CDS FASTA
LOC130985321
ATGAGTTGCATTCAGATCACTGCCTGCCAATTAGCCTCTTCACCTTCTGCATCACCAGTGCCGATTTCTCAACTCAGTAAGGCATCTATAACCCTCTTGAGAGCAAAGGCAAAATTTCCCAAGCTCTCCCTGAACTCGACCACTGCCACATCTGAATCCGAGCAAGCTCCGAATAGGTCTCCATGGAAAATCATTGAGAATGCTGTGGGTAATTTGAAAAAGGAGCCATCAGTTGAGGATTTACTGAGGCAGCAGATTCA...
LOC130985321
ATGAGTTGCATTCAGATCACTGCCTGCCAATTAGCCTCTTCACCTTCTGCATCACCAGTGCCGATTTCTCAACTCAGTAAGGCATCTATAACCCTCTTGAGAGCAAAGGCAAAATTTCCCAAGCTCTCCCTGAACTCGACCACTGCCACATCTGAATCCGAGCAAGCTCCGAATAGGTCTCCATGGAAAATCATTGAGAATGCTGTGGGTAATTTGAAAAAGGAGCCATCAGTTGAGGATTTACTGAGGCAGCAGATTCA...

Protein

3 records

下载 Protein FASTA
XP_057764230.1
MSCIQITACQLASSPSASPVPISQLSKASITLLRAKAKFPKLSLNSTTATSESEQAPNRSPWKIIENAVGNLKKEPSVEDLLRQQIQKQEYYDDGGTPGKPPGGGGGGGGGGGGDGGGFGEAEDGGFAEMWDEFSQVILATMGFIFLYIYIIEGEEITVLAKDLLRFLFKRQMSIRLKRLVEGWEDFFQSMKDKPAYDPYWLEREILSTTTMYDSPDKYAYIFKALDKIESTPDQLESPPEREAMSESGDDEQY
XP_057764231.1
MSCIQITACQLASSPSASPVPISQLSKASITLLRAKAKFPKLSLNSTTATSESEQAPNRSPWKIIENAVGNLKKEPSVEDLLRQQIQKQEYYDDGGTPGKPPGGGGGGGGGGGGDGGGFGEAEDGGFAEMWDEFSQVILATMGFIFLYIYIIEGEEITVLAKDLLRFLFKRQMSIRLKRLVEGWEDFFQSMKDKPAYDPYWLEREILSTTTMYDSPDKYAYIFKALDKIESTPDQLESPPEREAMSESGDDEQY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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