当前解析结果
SmilChr05G000522| 统一新 Gene ID | SmilChr05G000522 |
|---|---|
| 名称 | SmilChr05G000522 |
| 描述 | uncharacterized SmilChr05G000522 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4008405 - 4011669 / + |
| NCBI Gene ID | LOC130985326 |
|---|---|
| GeneID | 130985326 |
| locus_tag | - |
| NCBI Name | LOC130985326 |
| 原始查询 | LOC130985326 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549]; symbol=AT4G18230; hit=AT4G18230; species=arabidopsis; confidence=high |
| 产物 | UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549]; symbol=AT4G18230; hit=AT4G18230; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G18230 (AT4G18230)UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549] identity=68.4; qcov=1; evalue=4.26e-100; confidence=high |
| Rice | Os03g0423200- identity=82.8; qcov=0.248; evalue=2.61e-18; confidence=weak |
| GO | GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0043541 (UDP-N-acetylglucosamine transferase complex) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08660 (Alg14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985326 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057764239.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057764239.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057764239.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764239.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764239.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4009980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr5:4010593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C12 |
Chr5:4010934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C44,C74 |
Chr5:4011004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764239.1PF08660
Alg14 55-233 aa
XP_057764240.1PF08660
Alg14 55-233 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764239.1 |
Pfam | PF08660 |
Alg14 | Family | 55 | 233 | 1.1e-65 | 221.6 | Oligosaccharide biosynthesis protein Alg14 like |
XP_057764240.1 |
Pfam | PF08660 |
Alg14 | Family | 55 | 233 | 1.1e-65 | 221.6 | Oligosaccharide biosynthesis protein Alg14 like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。