当前解析结果
SmilChr05G000639| 统一新 Gene ID | SmilChr05G000639 |
|---|---|
| 名称 | SmilChr05G000639 |
| 描述 | peroxisome biogenesis protein 7 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4843855 - 4845495 / - |
| NCBI Gene ID | LOC130985354 |
|---|---|
| GeneID | 130985354 |
| locus_tag | - |
| NCBI Name | LOC130985354 |
| 原始查询 | LOC130985354 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxisome biogenesis protein 7 |
| 产物 | peroxisome biogenesis protein 7 |
| Arabidopsis | AT1G29260 (PEX7)peroxin 7 [Source:NCBI gene (formerly Entrezgene);Acc:839800] identity=80.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0245100 (OsWD40-39)- identity=62.6; qcov=1.02; evalue=9.99e-153; confidence=high |
| GO | GO:0005053 (peroxisome matrix targeting signal-2 binding); GO:0005515 (protein binding); GO:0005782 (peroxisomal matrix); GO:0005829 (cytosol); GO:0016558 (protein import into peroxisome matrix) |
| KEGG | smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40); PF23609 (Beta-prop_EIPR1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985354 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057764272.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057764272.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057764272.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057764272.1 |
| 5 | Spindle | Spindle | 0.20000 | XP_057764272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4844151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,D11 |
Chr5:4844277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr5:4844382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:4844904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr5:4844947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr5:4844996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr5:4845094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B2 |
Chr5:4845201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B134,B14,C43,C84 |
Chr5:4845212 |
TG |
T |
1bp_deletion | frameshift_variant | 52 | A11,A16,A2,A25,A8,B102,B103,B108,B112,B129,B135,B138,B22,B23,B3,B30,B33,B36,B39,B42,B44,B49,B56,B66,B70,B71,B96,B97,C13,C15,C20,C21,C23,C25,C27,C34,C38,C39,C47,C50,C56,C6,C61,C70,C72,C78,C80,C86,C9,D10,D7,D9 |
Chr5:4845266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B23,B36 |
Chr5:4845274 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A8,B129,B49,B71,C20,C27,C70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764272.1PF00400
WD40 58-86 aa
PF00400
WD40 95-131 aa
PF00400
WD40 138-175 aa
PF23609
Beta-prop_EIPR1 147-261 aa
PF00400
WD40 183-218 aa
PF00400
WD40 225-262 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764272.1 |
Pfam | PF00400 |
WD40 | Repeat | 58 | 86 | 3e-31 | 107.2 | WD domain, G-beta repeat |
XP_057764272.1 |
Pfam | PF00400 |
WD40 | Repeat | 95 | 131 | 3e-31 | 107.2 | WD domain, G-beta repeat |
XP_057764272.1 |
Pfam | PF00400 |
WD40 | Repeat | 138 | 175 | 3e-31 | 107.2 | WD domain, G-beta repeat |
XP_057764272.1 |
Pfam | PF23609 |
Beta-prop_EIPR1 | Repeat | 147 | 261 | 1.9e-23 | 84.0 | EIPR1 beta-propeller |
XP_057764272.1 |
Pfam | PF00400 |
WD40 | Repeat | 183 | 218 | 3e-31 | 107.2 | WD domain, G-beta repeat |
XP_057764272.1 |
Pfam | PF00400 |
WD40 | Repeat | 225 | 262 | 3e-31 | 107.2 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。