Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000649

染色体: Chr05 坐标: 4911563-4914368 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000649
名称SmilChr05G000649
描述heavy metal-associated isoprenylated plant protein 28-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向4911563 - 4914368 / -

ID 对照

NCBI Gene IDLOC130985363
GeneID130985363
locus_tag-
NCBI NameLOC130985363
原始查询LOC130985363

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heavy metal-associated isoprenylated plant protein 28-like
产物heavy metal-associated isoprenylated plant protein 28-like
ArabidopsisAT1G06330 (AT1G06330)
Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837144]
identity=51.7; qcov=1.03; evalue=1.04e-47; confidence=medium
RiceOs01g0758000
-
identity=42.6; qcov=1.1; evalue=1.06e-37; confidence=medium
GOGO:0046872 (metal ion binding)
KEGG-
PfamPF00403 (HMA)
InterPro-
eggNOG-
NRGeneID:130985363

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057764283.1
2 Cytoplasm 细胞质 0.80000 XP_057764283.1
3 Cytosol 细胞质基质 0.60000 XP_057764283.1
4 Cell membrane 细胞膜 0.20000 XP_057764283.1
5 Chromosome 染色体 0.00000 XP_057764283.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:4911797 C T EMS_canonical_SNV CDS_variant 3 B119,B130,C29
Chr5:4911801 G A EMS_canonical_SNV CDS_variant 5 B38,B39,B97,C20,C8
Chr5:4911802 C T EMS_canonical_SNV CDS_variant 2 C20,C8
Chr5:4911812 C T EMS_canonical_SNV CDS_variant 1 C8
Chr5:4911826 G A EMS_canonical_SNV CDS_variant 2 A18,C44
Chr5:4912007 G A EMS_canonical_SNV CDS_variant 2 C41,D11
Chr5:4912013 C T EMS_canonical_SNV CDS_variant 3 A18,B135,B91
Chr5:4912261 G A EMS_canonical_SNV CDS_variant 2 B79,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764283.1
152 aa
N
1
76
152
HMA
C
PF00403 HMA 7-62 aa
XP_057764285.1
152 aa
N
1
76
152
HMA
C
PF00403 HMA 7-62 aa
XP_057764286.1
147 aa
N
1
74
147
HMA
C
PF00403 HMA 2-57 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764283.1 Pfam PF00403 HMA Domain 7 62 1.2e-17 64.8 Heavy-metal-associated domain
XP_057764285.1 Pfam PF00403 HMA Domain 7 62 1.2e-17 64.8 Heavy-metal-associated domain
XP_057764286.1 Pfam PF00403 HMA Domain 2 57 1.4e-17 64.5 Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057908300.1
AATTACAAAGACTCTGTCAAAATTAAAAGACATTTATACGAACAAATCATTTCAGTGTAATTTCACGCTTTGGTTGTCGTTGAAAGAAGCATTATAATAGTAGGCTGAGATTTTGGGAACGAAGATAGCAAAAGTCTCGCCATGTCGATTGTGGAGATGAGAGTGCACATGGACTGTCCCGGATGCGAAAGAAAAATAACGAAAGCCCTTTCAAAATTAGATGGCGTGGACAACATAGACGTAGATATGAACATGCAAAA...
XM_057908303.1
CATTTATACGAACAAATCATTTCAGTGTAATTTCACGCTTTGGTTGTCGTTGAAAGAAGCATTATAATAGTAGGCTGAGATTGTGGAGATGAGAGTGCACATGGACTGTCCCGGATGCGAAAGAAAAATAACGAAAGCCCTTTCAAAATTAGATGGCGTGGACAACATAGACGTAGATATGAACATGCAAAAGGTGACGGTGACAGGGTGGGCAGATCAGAAAAAGGTTCTGAAAACTGTACGGAAGACCGGCCGGAAGG...

CDS

3 records

下载 CDS FASTA
LOC130985363
ATGTCGATTGTGGAGATGAGAGTGCACATGGACTGTCCCGGATGCGAAAGAAAAATAACGAAAGCCCTTTCAAAATTAGATGGCGTGGACAACATAGACGTAGATATGAACATGCAAAAGGTGACGGTGACAGGGTGGGCAGATCAGAAAAAGGTTCTGAAAACTGTACGGAAGACCGGCCGGAAGGCGGAGCTATGGCCGTTCCCGTACAACCCGGAGTACCACGCCTACTACAGCCACTACTACGGGAGTCCGGCCAA...
LOC130985363
ATGTCGATTGTGGAGATGAGAGTGCACATGGACTGTCCCGGATGCGAAAGAAAAATAACGAAAGCCCTTTCAAAATTAGATGGCGTGGACAACATAGACGTAGATATGAACATGCAAAAGGTGACGGTGACAGGGTGGGCAGATCAGAAAAAGGTTCTGAAAACTGTACGGAAGACCGGCCGGAAGGCGGAGCTATGGCCGTTCCCGTACAACCCGGAGTACCACGCCTACTACAGCCACTACTACGGGAGTCCGGCCAA...

Protein

3 records

下载 Protein FASTA
XP_057764283.1
MSIVEMRVHMDCPGCERKITKALSKLDGVDNIDVDMNMQKVTVTGWADQKKVLKTVRKTGRKAELWPFPYNPEYHAYYSHYYGSPANYGSASGYSTPANYYAAETTSTYNYRKHGYNGHDHGYYQQPPASDILDSRTAAIFSDENATGCSVM
XP_057764285.1
MSIVEMRVHMDCPGCERKITKALSKLDGVDNIDVDMNMQKVTVTGWADQKKVLKTVRKTGRKAELWPFPYNPEYHAYYSHYYGSPANYGSASGYSTPANYYAAETTSTYNYRKHGYNGHDHGYYQQPPASDILDSRTAAIFSDENATGCSVM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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