Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000667`

染色体: Chr05 坐标: 5065116-5099080 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000667`
名称	SmilChr05G000667
描述	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5065116 - 5099080 / `-`

ID 对照

NCBI Gene ID	`LOC130985380`
GeneID	`130985380`
locus_tag	`-`
NCBI Name	`LOC130985380`
原始查询	`LOC130985380`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like
产物	DExH-box ATP-dependent RNA helicase DExH7%2C chloroplastic-like
Arabidopsis	`AT1G58060` (AT1G58060) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842173] identity=59.8; qcov=0.999; evalue=0; confidence=high
Rice	`Os10g0471350` - identity=42.6; qcov=0.526; evalue=5.17e-165; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF24899 (UBA_DHX29); PF26026 (RNA_hel_CTD)
InterPro	-
eggNOG	-
NR	GeneID:130985380

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764321.1`
2	Cytoplasm	细胞质	0.60000	`XP_057764321.1`
3	Cytosol	细胞质基质	0.60000	`XP_057764323.1`
4	Chromosome	染色体	0.00000	`XP_057764321.1`
5	Centromere	着丝粒	0.00000	`XP_057764321.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5066333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B88,C2,C59,D11
`Chr5:5067677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C29,C38
`Chr5:5067758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:5068608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B7,B83,B98,C11,C75
`Chr5:5072275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr5:5072280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:5072723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr5:5076341`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B25
`Chr5:5076341`	`AT`	`A`	1bp_deletion	CDS_variant	1	B25
`Chr5:5079520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:5080820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,C2,C59
`Chr5:5080830`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764321.1

1423 aa

712

1423

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

RNA_hel_CTD

PF24899 UBA_DHX29 68-120 aa PF00270 DEAD 606-767 aa PF00271 Helicase_C 889-1017 aa PF04408 WHD_HA2 1082-1110 aa PF21010 HA2_C 1114-1179 aa PF07717 OB_NTP_bind 1269-1352 aa PF26026 RNA_hel_CTD 1359-1415 aa

XP_057764322.1

1422 aa

711

1422

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

RNA_hel_CTD

XP_057764323.1

1246 aa

623

1246

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

PF24899 UBA_DHX29 68-120 aa PF00270 DEAD 606-767 aa PF00271 Helicase_C 889-1017 aa PF04408 WHD_HA2 1082-1110 aa PF21010 HA2_C 1114-1179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764321.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	6.5e-15	55.4	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764321.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.5e-11	45.1	DEAD/DEAH box helicase
`XP_057764321.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	1.5e-10	42.0	Helicase conserved C-terminal domain
`XP_057764321.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.9e-07	31.1	Helicase associated domain (HA2), winged-helix
`XP_057764321.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.5e-10	42.2	Helicase associated domain (HA2), ratchet-like
`XP_057764321.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	1269	1352	9.3e-22	77.7	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057764321.1`	Pfam	`PF26026`	RNA_hel_CTD	Domain	1359	1415	1.3e-12	48.0	C-terminal domain in RNA helicases
`XP_057764322.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	6.5e-15	55.4	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764322.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.5e-11	45.1	DEAD/DEAH box helicase
`XP_057764322.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	1.5e-10	42.0	Helicase conserved C-terminal domain
`XP_057764322.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.9e-07	31.1	Helicase associated domain (HA2), winged-helix
`XP_057764322.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.5e-10	42.2	Helicase associated domain (HA2), ratchet-like
`XP_057764322.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	1268	1351	8.8e-22	77.8	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057764322.1`	Pfam	`PF26026`	RNA_hel_CTD	Domain	1358	1414	1.3e-12	48.0	C-terminal domain in RNA helicases
`XP_057764323.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	5.5e-15	55.6	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764323.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.2e-11	45.3	DEAD/DEAH box helicase
`XP_057764323.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	1.4e-10	42.1	Helicase conserved C-terminal domain
`XP_057764323.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.4e-07	31.3	Helicase associated domain (HA2), winged-helix
`XP_057764323.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.1e-10	42.5	Helicase associated domain (HA2), ratchet-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908338.1
CTCGTACAACTCTCTATTTCAGATGCCTCGACTAAAGTTCCAACCTCATTACTTCCAAAGGTGTTGTGGAAACACATCCCAACAAAGGTGTTTGCTTTTTGTTGGAAACTTCTTTAAGATAGGATTCCTACAAAAGATAACTTCATCAAAATTAACATTGTGGTTGGTTTCAATGATTCATCTTGCATCCTCTGCTATAGTCTTGAAACAACCCTCCATTTGATGCTTGAGTGTCAATTTGCCACTCAAATCTGGAAATT...

XM_057908339.1
GTACAACTCTCTATTTCAGATGCCTCGACTAAAGTTCCAACCTCATTACTTCCAAAGGTGTTGTGGAAACACATCCCAACAAAGGTGTTTGCTTTTTGTTGGAAACTTCTTTAAGATAGGATTCCTACAAAAGATAACTTCATCAAAATTAACATTGTGGTTGGTTTCAATGATTCATCTTGCATCCTCTGCTATAGTCTTGAAACAACCCTCCATTTGATGCTTGAGTGTCAATTTGCCACTCAAATCTGGAAATTAAT...

CDS

3 records

下载 CDS FASTA

LOC130985380
ATGGCGCCAAAGAAGGATCATCAAAAGCGTAAGGCATCGTCATCGAAGGGGAAGGCCTCCTCCTCCACCGGTCCCAAGCTCCAATTATCGGCCGAGAATGAGAACCGCCTCCGCCGCCTTCTTCTCAGCTCTGGAAGACCGGGTGCTTCTCTGGCGCCATCCGAAGACATTCTTTCTCTCTCTAAAGAGCAGAGAGCAAAAAGGCTCCGCTCGGTCTATGAGAAGCTGTCTTGCGAGGGGTTCAAAGATGACCAAATTGA...

Protein

3 records

下载 Protein FASTA

XP_057764321.1
MAPKKDHQKRKASSSKGKASSSTGPKLQLSAENENRLRRLLLSSGRPGASLAPSEDILSLSKEQRAKRLRSVYEKLSCEGFKDDQIELVLSILKESATYEAALDWLCLNIPGNELPPKFSSGGSLSTSIGSVGVISTAREDWVPSKDSLPDPVGEKEQGSLKIKELRDDAILDSAQRSQADWIRQYMERQEEDESDSLDMYSMENASSEKALEPRSNYESIIDDYNAARLQAANAKDRGDKKSQEEAGFIIRKLKKEISA...

XP_057764322.1
MAPKKDHQKRKASSSKGKASSSTGPKLQLSAENENRLRRLLLSSGRPGASLAPSEDILSLSKEQRAKRLRSVYEKLSCEGFKDDQIELVLSILKESATYEAALDWLCLNIPGNELPPKFSSGGSLSTSIGSVGVISTAREDWVPSKDSLPDPVGEKEQGSLKIKELRDDAILDSAQRSQADWIRQYMERQEEDESDSLDMYSMENASSEKALEPRSNYESIIDDYNAARLQAANAKDRGDKKSQEEAGFIIRKLKKEISA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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