当前解析结果
SmilChr01G002640| 统一新 Gene ID | SmilChr01G002640 |
|---|---|
| 名称 | SmilChr01G002640 |
| 描述 | uncharacterized SmilChr01G002640 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 44679049 - 44689107 / - |
| NCBI Gene ID | LOC130985396 |
|---|---|
| GeneID | 130985396 |
| locus_tag | - |
| NCBI Name | LOC130985396 |
| 原始查询 | LOC130985396 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Protein prenylyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837545]; symbol=AT1G10095; hit=AT1G10095; species=arabidopsis; confidence=medium |
| 产物 | Protein prenylyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837545]; symbol=AT1G10095; hit=AT1G10095; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G10095 (AT1G10095)Protein prenylyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837545] identity=43.1; qcov=1.02; evalue=7.87e-102; confidence=medium |
| Rice | Os01g0684800- identity=39.5; qcov=0.571; evalue=2.98e-41; confidence=medium |
| GO | GO:0004660 (protein farnesyltransferase activity); GO:0004662 (CAAX-protein geranylgeranyltransferase activity); GO:0005737 (cytoplasm); GO:0005953 (CAAX-protein geranylgeranyltransferase complex); GO:0005965 (protein farnesyltransferase complex); GO:0018343 (protein farnesylation); GO:0018344 (protein geranylgeranylation) |
| KEGG | - |
| Pfam | PF01239 (PPTA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985396 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764341.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057764341.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764341.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764341.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764341.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:44679375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C19,C55 |
Chr1:44681687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B126,B61,B65 |
Chr1:44681961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C39 |
Chr1:44684335 |
G |
GAC |
2bp_insertion | frameshift_variant | 182 | A10,A13,A14,A15,A16,A18,A19,A20,A22,A24,A25,A3,A6,A7,A9,B1,B100,B102,B105,B107,B109,B11,B110,B111,B112,B113,B114,B115,B118,B119,B120,B122,B124,B126,B128,B129,B13,B130,B132,B133,B134,B135,B136,B138,B139,B15,B16,B18,B19,B2,B20,B21,B22,B25,B26,B27,B29,B30,B31,B32,B33,B35,B36,B37,B42,B43,B44,B45,B47,B48,B50,B51,B52,B53,B56,B57,B58,B6,B60,B61,B64,B65,B67,B68,B69,B7,B71,B72,B73,B76,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B9,B91,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C2,C20,C24,C25,C27,C29,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C47,C49,C51,C53,C54,C55,C57,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C76,C78,C79,C8,C80,C83,C84,C86,C9,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9 |
Chr1:44684337 |
C |
CAT |
2bp_insertion | frameshift_variant | 7 | A14,A4,B103,B44,B59,C3,C75 |
Chr1:44687883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C43,C9 |
Chr1:44688140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B21,B7,B99,C2 |
Chr1:44688146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B80 |
Chr1:44688523 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C53 |
Chr1:44688523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr1:44688571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764341.1PF01239
PPTA 240-270 aa
PF01239
PPTA 328-355 aa
XP_057764349.1PF01239
PPTA 186-214 aa
PF01239
PPTA 227-257 aa
PF01239
PPTA 315-342 aa
XP_057764356.1PF01239
PPTA 305-332 aa
XP_057764364.1PF01239
PPTA 186-214 aa
PF01239
PPTA 292-319 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764341.1 |
Pfam | PF01239 |
PPTA | Repeat | 240 | 270 | 4.8e-17 | 61.2 | Protein prenyltransferase alpha subunit repeat |
XP_057764341.1 |
Pfam | PF01239 |
PPTA | Repeat | 328 | 355 | 4.8e-17 | 61.2 | Protein prenyltransferase alpha subunit repeat |
XP_057764349.1 |
Pfam | PF01239 |
PPTA | Repeat | 186 | 214 | 2.6e-21 | 74.6 | Protein prenyltransferase alpha subunit repeat |
XP_057764349.1 |
Pfam | PF01239 |
PPTA | Repeat | 227 | 257 | 2.6e-21 | 74.6 | Protein prenyltransferase alpha subunit repeat |
XP_057764349.1 |
Pfam | PF01239 |
PPTA | Repeat | 315 | 342 | 2.6e-21 | 74.6 | Protein prenyltransferase alpha subunit repeat |
XP_057764356.1 |
Pfam | PF01239 |
PPTA | Repeat | 305 | 332 | 3.5e-11 | 42.8 | Protein prenyltransferase alpha subunit repeat |
XP_057764364.1 |
Pfam | PF01239 |
PPTA | Repeat | 186 | 214 | 2e-15 | 56.1 | Protein prenyltransferase alpha subunit repeat |
XP_057764364.1 |
Pfam | PF01239 |
PPTA | Repeat | 292 | 319 | 2e-15 | 56.1 | Protein prenyltransferase alpha subunit repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。