当前解析结果
SmilChr05G000688| 统一新 Gene ID | SmilChr05G000688 |
|---|---|
| 名称 | SmilChr05G000688 |
| 描述 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5210101 - 5220252 / + |
| NCBI Gene ID | LOC130985400 |
|---|---|
| GeneID | 130985400 |
| locus_tag | - |
| NCBI Name | LOC130985400 |
| 原始查询 | LOC130985400 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 |
| 产物 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 |
| Arabidopsis | AT4G18465 (AT4G18465)RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827579] identity=75.8; qcov=0.993; evalue=0; confidence=high |
| Rice | Os01g0212100 (P0031E09.39-1)- identity=74; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF13401 (AAA_22); PF21010 (HA2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985400 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057764342.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057764342.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764342.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764342.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764342.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5210508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B51,B87,B88 |
Chr5:5210692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr5:5211023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,C14,C72,C85 |
Chr5:5211162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B67,C57 |
Chr5:5211169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:5211175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr5:5211435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B84,C37 |
Chr5:5211760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr5:5211792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr5:5211798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C77,D6 |
Chr5:5211954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:5211955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,B84,C24,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764342.1PF00270
DEAD 59-209 aa
PF13401
AAA_22 62-190 aa
PF00271
Helicase_C 265-392 aa
PF04408
WHD_HA2 455-484 aa
PF21010
HA2_C 485-544 aa
PF07717
OB_NTP_bind 602-681 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764342.1 |
Pfam | PF00270 |
DEAD | Domain | 59 | 209 | 5e-08 | 33.6 | DEAD/DEAH box helicase |
XP_057764342.1 |
Pfam | PF13401 |
AAA_22 | Domain | 62 | 190 | 3.4e-07 | 31.4 | AAA domain |
XP_057764342.1 |
Pfam | PF00271 |
Helicase_C | Domain | 265 | 392 | 4.7e-14 | 53.3 | Helicase conserved C-terminal domain |
XP_057764342.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 455 | 484 | 7.3e-05 | 23.5 | Helicase associated domain (HA2), winged-helix |
XP_057764342.1 |
Pfam | PF21010 |
HA2_C | Domain | 485 | 544 | 1.5e-11 | 45.4 | Helicase associated domain (HA2), ratchet-like |
XP_057764342.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 602 | 681 | 1.7e-22 | 80.1 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。