Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000707

染色体: Chr05 坐标: 5328247-5332836 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000707
名称SmilChr05G000707
描述GDSL esterase/lipase At1g28580-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向5328247 - 5332836 / +

ID 对照

NCBI Gene IDLOC130985414
GeneID130985414
locus_tag-
NCBI NameLOC130985414
原始查询LOC130985414

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GDSL esterase/lipase At1g28580-like
产物GDSL esterase/lipase At1g28580-like
ArabidopsisAT1G28570 (AT1G28570)
SGNH hydrolase-type esterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839757]
identity=51.5; qcov=0.95; evalue=3.35e-123; confidence=high
RiceOs01g0649900 (OsGELP20)
-
identity=48; qcov=0.956; evalue=3.78e-108; confidence=high
GOGO:0016788 (hydrolase activity, acting on ester bonds)
KEGG-
PfamPF00657 (Lipase_GDSL)
InterPro-
eggNOG-
NRGeneID:130985414

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 0.80000 XP_057764362.1
2 Vacuole 液泡 0.40000 XP_057764361.1
3 Cell wall 细胞壁 0.20000 XP_057764362.1
4 Nucleus 细胞核 0.00000 XP_057764361.1
5 Chromosome 染色体 0.00000 XP_057764361.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:5329819 G GAA 2bp_insertion frameshift_variant 3 B52,B94,C7
Chr5:5329819 G GAA 2bp_insertion CDS_variant 3 B52,B94,C7
Chr5:5329858 A ACT 2bp_insertion frameshift_variant 24 A14,A15,A6,A7,B130,B136,B16,B19,B23,B47,B48,B50,B59,C19,C2,C21,C22,C29,C31,C40,C50,C51,C70,C79
Chr5:5329859 A AG 1bp_insertion frameshift_variant 24 A14,A15,A6,A7,B130,B136,B16,B19,B23,B47,B48,B50,B59,C19,C2,C21,C22,C29,C31,C40,C50,C51,C70,C79
Chr5:5329865 A AT 1bp_insertion frameshift_variant 2 B136,C70
Chr5:5329865 A AT 1bp_insertion CDS_variant 2 B136,C70
Chr5:5329901 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:5329903 TAA T 2bp_deletion frameshift_variant 11 A23,A3,B115,B17,B20,B27,B36,B98,C24,C35,C81
Chr5:5329908 C CT 1bp_insertion frameshift_variant 11 A23,A3,B115,B17,B20,B27,B36,B98,C24,C35,C81
Chr5:5329911 A AGG 2bp_insertion frameshift_variant 11 A23,A3,B115,B17,B20,B27,B36,B98,C24,C35,C81
Chr5:5329940 CTA C 2bp_deletion frameshift_variant 4 B47,B50,C19,C29
Chr5:5329940 CTA C 2bp_deletion CDS_variant 4 B47,B50,C19,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764361.1
422 aa
N
1
211
422
Lipase_GDSL
C
PF00657 Lipase_GDSL 86-401 aa
XP_057764362.1
362 aa
N
1
181
362
Lipase_GDSL
C
PF00657 Lipase_GDSL 26-341 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764361.1 Pfam PF00657 Lipase_GDSL Family 86 401 6.2e-25 89.3 GDSL-like Lipase/Acylhydrolase
XP_057764362.1 Pfam PF00657 Lipase_GDSL Family 26 341 3.9e-25 90.0 GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057908379.1
GCGATTCACTAGCAGACACCGGCAACTCAATCCAATTCGCTCCGTCTCAAGCCGCCGCGGCGCCACCCTATGGAGAAACTTTCTTCCACCGTCCCACGGGGAGGTGGTCCGACGGCCGCCTCGTCATCGATTTTACCGCTGAGGCTCTGGGGCTTCCATTTGTGCAGCCATTTTGGGGTCCGAGCAGCAGAGGCTTCGACGGTGGTGTGAATTTCGCGGTGTCGGGTTGCACGGCGCTGCCGGACTCTTTTTTTGCCGAG...
XM_057908378.1
TATAGATATAGATTTGTATTTGTGTTATACTAAGAAGTTGAAATAATAAATAGTACTTCCTCCATTCCAATATAAGTGGCTCAAAACTTTTGGGCACGAGAATTAAAGAGAATGTGTTAAAAGTGATAAGGGTCACACTTTTTAAAAGATTTGAAATCTCAAGTCTATACAATATAGCGCAGAAAATCTGACTCCGGATAGTGATCGTAGAAATTCTATACCTATCTCAAGTACGTGCAGTCTTGAGATTTAATTAGTCT...

CDS

2 records

下载 CDS FASTA
LOC130985414
ATGAAAGGAATGTTGCATGAAAAATATATGACCACTATAATAAGTAATAATAATAAAAATAGATTGAGACCCGAATATCAAATGCCTAAGTCAAAAATAAATATACATACGCTGCTCCACACTCTATATATTGGCAGTGATAACTCCACCACTGTCAGTGGATCTTTTTCCAAGAAGAGGATGAATTACCCATTCGTTATTATCCTGATTTTGGTATCACGAAGCAACCACGCTTCTTCTGCGTGCTTCAAATCCATCAT...
LOC130985414
ATGAATTACCCATTCGTTATTATCCTGATTTTGGTATCACGAAGCAACCACGCTTCTTCTGCGTGCTTCAAATCCATCATAGGCTTCGGCGCTTCACTAGCAGACACGGGCAACTCAATCCAATTCGCTCCGTCTCAAGCCGCCGCGGCGCCACCCTATGGAGAAACTTTCTTCCACCGTCCCACGGGGAGGTGGTCCGACGGCCGCCTCGTCATCGATTTTACCGCTGAGGCTCTGGGGCTTCCATTTGTGCAGCCATT...

Protein

2 records

下载 Protein FASTA
XP_057764361.1
MKGMLHEKYMTTIISNNNKNRLRPEYQMPKSKINIHTLLHTLYIGSDNSTTVSGSFSKKRMNYPFVIILILVSRSNHASSACFKSIIGFGASLADTGNSIQFAPSQAAAAPPYGETFFHRPTGRWSDGRLVIDFTAEALGLPFVQPFWGPSSRGFDGGVNFAVSGCTALPDSFFAKEGLQIELANTYLAAQLSWFKELFLPKFCHTPSDCKNFLETSLVLVGDIGGNDYNYAFLQGKNVESVQSIVPKVVKAISLTINEL...
XP_057764362.1
MNYPFVIILILVSRSNHASSACFKSIIGFGASLADTGNSIQFAPSQAAAAPPYGETFFHRPTGRWSDGRLVIDFTAEALGLPFVQPFWGPSSRGFDGGVNFAVSGCTALPDSFFAKEGLQIELANTYLAAQLSWFKELFLPKFCHTPSDCKNFLETSLVLVGDIGGNDYNYAFLQGKNVESVQSIVPKVVKAISLTINELIKLGATTLMVPGNVPIGCLVVYLTYFKSSNQTYYDPKTGCLNWLNRFSRLHNKVLQTELE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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