Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000704`

染色体: Chr05 坐标: 5297035-5321242 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000704`
名称	SmilChr05G000704
描述	GDSL esterase/lipase At1g28580-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5297035 - 5321242 / `+`

ID 对照

NCBI Gene ID	`LOC130985416`
GeneID	`130985416`
locus_tag	`-`
NCBI Name	`LOC130985416`
原始查询	`LOC130985416`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GDSL esterase/lipase At1g28580-like
产物	GDSL esterase/lipase At1g28580-like
Arabidopsis	`AT1G28580` (AT1G28580) GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839758] identity=51.9; qcov=0.958; evalue=7.98e-122; confidence=high
Rice	`Os01g0649900` (OsGELP20) - identity=48.6; qcov=0.932; evalue=1.04e-115; confidence=high
GO	GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	-
Pfam	PF00657 (Lipase_GDSL)
InterPro	-
eggNOG	-
NR	GeneID:130985416

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057764365.1`
2	Vacuole	液泡	0.40000	`XP_057764365.1`
3	Cell wall	细胞壁	0.20000	`XP_057764366.1`
4	Nucleus	细胞核	0.00000	`XP_057764365.1`
5	Chromosome	染色体	0.00000	`XP_057764365.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5297694`	`T`	`TTA`	2bp_insertion	frameshift_variant	4	A5,B103,B72,C15
`Chr5:5297694`	`T`	`TTA`	2bp_insertion	CDS_variant	4	A5,B103,B72,C15
`Chr5:5297696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C49
`Chr5:5297745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C17
`Chr5:5297747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,C17
`Chr5:5297764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B56,C22,C27,C28
`Chr5:5297810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C68
`Chr5:5298520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B126,B55,C34,C76
`Chr5:5298524`	`AAC`	`*`	2bp_deletion	CDS_variant	4	B131,B140,B15,B47
`Chr5:5298543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B17,B20,C35,C81
`Chr5:5298554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr5:5298584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764365.1

383 aa

192

383

Lipase_GDSL

PF00657 Lipase_GDSL 31-354 aa

XP_057764366.1

383 aa

192

383

Lipase_GDSL

PF00657 Lipase_GDSL 31-354 aa

XP_057764367.1

382 aa

191

382

Lipase_GDSL

PF00657 Lipase_GDSL 31-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764365.1`	Pfam	`PF00657`	Lipase_GDSL	Family	31	354	4.9e-27	96.1	GDSL-like Lipase/Acylhydrolase
`XP_057764366.1`	Pfam	`PF00657`	Lipase_GDSL	Family	31	354	7.5e-28	98.8	GDSL-like Lipase/Acylhydrolase
`XP_057764367.1`	Pfam	`PF00657`	Lipase_GDSL	Family	31	353	1.5e-23	84.8	GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908383.1
AAATTTTTAAATGATTTTTCTAATAATAAAATATAATTTAAAAATTATAGTTATGCTAAAAAATGAAAAGAAAAATAAAACAGAACCTAAAATTGTAAAATAAAATAAACAAAAAAAAAGAGAAAAAAATTAAAATAATTAACTAGAAAAACAATAGAAACTCAGAAAAATAAATAACAAAAGGCAACTCAAAAGCAAAATATAAAAGGGGTTTAGAATTTTAAAACAAAGGTAAAAATAAAAAAGAAAAAAGAAAAAAC...

XM_057908384.1
TTTTAAATGATTTTTCTAATAATAAAATATAATTTAAAAATTATAGTTATGCTAAAAAATGAAAAGAAAAATAAAACAGAACCTAAAATTGTAAAATAAAATAAACAAAAAAAAAGAGAAAAAAATTAAAATAATTAACTAGAAAAACAATAGAAACTCAGAAAAATAAATAACAAAAGGCAACTCAAAAGCAAAATATAAAAGGGGTTTAGAATTTTAAAACAAAGGTAAAAATAAAAAAGAAAAAAGAAAAAACAAAC...

CDS

3 records

下载 CDS FASTA

LOC130985416
ATGGTGGCCCTTGCTGCAACTATCTTGACTTTAATCGCCGTACTCTCCTCGTCGGCTAGCAGCGAATCGGCGGCCGGATGCTTCGAATCCATCATCAGTTTCGGCGATTCGCTCGCCGACACCGGCAACTATCCTCTGCTCTACGGCGCCGACACCCCAATGCACTTTGTTCACCCGCCTTACGGCCGGACTTTCTTCCACCGTCCCACCGGAAGATGCTCCGACGGCCGTCTCGTCATTGACTTCATCGCTCAAAGTTT...

Protein

3 records

下载 Protein FASTA

XP_057764365.1
MVALAATMLTLIAVLSSSASSESAAGCFESIISFGDSLADTGNYPLLCGADCSLHFVLPPYGRTFFHRLTGRCSDGRLVIDFIAQSLGLPLVQPYIAGGECGRSFSKGVNFAVIAATALDFQFDEKIGFTNAATNVSLGTQLDRFKQFLATIPDGRKFLQKSLVLMGEIGGNDYNHPIIQGSTLEAIQPLVSLVIGYIGSTIEELIKLGAETLLVPGNLPIGCLPIYLTEFKASSSAQDYDPKTGCLNWLNDFAIYHNQL...

XP_057764366.1
MVALAATILTLIAVLSSSASSESAAGCFESIISFGDSLADTGNYPLLYGADTPMHFVHPPYGRTFFHRPTGRCSDGRLVIDFIAQSLRLPLVQPYIAGGEGGRSFSKGVNFAVIGATALDFQFYEKIGFPNAYTNVSLGTQLDWFKQFLATIPDGRKFLQKSLVLMGEIGGNDYNHPIIQGSTLEAIQPLVSLVIGYIGSTIEELIKLGAETLLVPGNLPIGCLPIYLTEFKASSSAQDYDPKTGCLNWLNDFAIYHNQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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