Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002642`

染色体: Chr01 坐标: 44692520-44697875 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002642`
名称	SmilChr01G002642
描述	uncharacterized SmilChr01G002642
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44692520 - 44697875 / `-`

ID 对照

NCBI Gene ID	`LOC130985422`
GeneID	`130985422`
locus_tag	`-`
NCBI Name	`LOC130985422`
原始查询	`LOC130985422`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837836]; symbol=AT1G12800; hit=AT1G12800; species=arabidopsis; confidence=high
产物	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837836]; symbol=AT1G12800; hit=AT1G12800; species=arabidopsis; confidence=high
Arabidopsis	`AT1G12800` (AT1G12800) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837836] identity=51.9; qcov=0.972; evalue=0; confidence=high
Rice	`Os02g0115600` - identity=40.4; qcov=1.03; evalue=5.09e-165; confidence=medium
GO	GO:0003676 (nucleic acid binding)
KEGG	-
Pfam	PF00575 (S1)
InterPro	-
eggNOG	-
NR	GeneID:130985422

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764375.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057764375.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057764375.1`
4	Nucleus	细胞核	0.00000	`XP_057764375.1`
5	Chromosome	染色体	0.00000	`XP_057764375.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44693438`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	A13
`Chr1:44693438`	`GAC`	`G`	2bp_deletion	CDS_variant	1	A13
`Chr1:44693623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B128,C78
`Chr1:44694556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr1:44694734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:44694995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:44695149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr1:44695361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B138,B53,B68,C79
`Chr1:44695570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B126,B61,B65
`Chr1:44695572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr1:44696302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr1:44696347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764375.1

799 aa

400

799

PF00575 S1 613-683 aa

XP_057764385.1

776 aa

388

776

PF00575 S1 590-660 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764375.1`	Pfam	`PF00575`	S1	Domain	613	683	1.1e-14	55.3	S1 RNA binding domain
`XP_057764385.1`	Pfam	`PF00575`	S1	Domain	590	660	1e-14	55.4	S1 RNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908392.1
GCCTATCATTCTTGAAGATAAATAACGACAGCTTCTTCCTTCACCTTTGTTGTTTCTCTTCACTACTCTTCCACTTCCCTAACAAATAACTCTACGTTTTCTGAAAAATTATCTCATAGTTTATCAATCTTATCACATGAGCATCGCCTTATCTCATCAGCAATGGATAGTTTCACTCTCAGAACTACCGCCAATTCCACCACTTTCTCTGCTATTCAATTCTTTCCGCAACCCGTTTCTCATGCCAAGAAATTCGGAAT...

XM_057908402.1
TAAATAACGACAGCTTCTTCCTTCACCTTTGTTGTTTCTCTTCACTACTCTTCCACTTCCCTAACAAATAACTCTACGTTTTCTGAAAAATTATCTCATAGTTTATCAATCTTATCACATGAGCATCGCCTTATCTCATCAGCAATGGATAGTTTCACTCTCAGAACTACCGCCAATTCCACCACTTTCTCTGCTATTCAATTCTTTCCGCAACCCGTTTCTCATGCCAAGAAATTCGGAATTCTGAATTTCCCTTGCAG...

CDS

2 records

下载 CDS FASTA

LOC130985422
ATGGATAGTTTCACTCTCAGAACTACCGCCAATTCCACCACTTTCTCTGCTATTCAATTCTTTCCGCAACCCGTTTCTCATGCCAAGAAATTCGGAATTCTGAATTTCCCTTGCAGAAAACCCAGAAAATTCTGGGTTTCTGCATCAAAAGATGAACCGCAGCTTGACGAGTGGGATAAGATGGAGCTTAAATTTGGTCGAATGATTGGGGAAGACCCCAAAATCACTTTAGCCAAGATAATGGGTAGAAAATCAAATCC...

Protein

2 records

下载 Protein FASTA

XP_057764375.1
MDSFTLRTTANSTTFSAIQFFPQPVSHAKKFGILNFPCRKPRKFWVSASKDEPQLDEWDKMELKFGRMIGEDPKITLAKIMGRKSNPDVSYLEIEKLLDKKKGSALDENVEEVPCDLPDQKRSVKSVQGLNLVRPVLKKGAKFEETAKPVEKSAKSSIRPIKKASEETKSSVPDVILRKPRSFNEDDGASGSTRFGMRPNLSLRMGKEPQKERFSDITLLRKPEPMTSKSEVGEENSRQDSFDGSYRSSSTEGRGSAPLL...

XP_057764385.1
MDSFTLRTTANSTTFSAIQFFPQPVSHAKKFGILNFPCRKPRKFWVSASKDEPQLDEWDKMELKFGRMIGEDPKITLAKIMGRKSNPDVSYLEIEKLLDKKKGSALDENVEEVPCDLPDQKRSVKSVQGLNLVRPVLKKGAKFEETAKPVEKSAKSSIRPIKKASEETKSSVPDVILRKPRSFNEDDGASGSTRFGMRPNLSLRMGKEPQKERFSDITLLRKPEPMTSKSEVGEENSRQDSFDGSYRSSSTEGRGSAPLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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