Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000723

染色体: Chr05 坐标: 5519418-5522369 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000723
名称SmilChr05G000723
描述uncharacterized SmilChr05G000723
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向5519418 - 5522369 / -

ID 对照

NCBI Gene IDLOC130985435
GeneID130985435
locus_tag-
NCBI NameLOC130985435
原始查询LOC130985435

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817288]; symbol=AT2G27430; hit=AT2G27430; species=arabidopsis; confidence=high
产物ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817288]; symbol=AT2G27430; hit=AT2G27430; species=arabidopsis; confidence=high
ArabidopsisAT2G27430 (AT2G27430)
ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817288]
identity=57.6; qcov=0.858; evalue=3.61e-135; confidence=high
RiceOs05g0573800
-
identity=44.1; qcov=0.825; evalue=3.21e-74; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985435

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057764402.1
2 Nucleus 细胞核 0.40000 XP_057764402.1
3 Cytosol 细胞质基质 0.20000 XP_057764402.1
4 Chromosome 染色体 0.00000 XP_057764402.1
5 Centromere 着丝粒 0.00000 XP_057764402.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:5519806 G A EMS_canonical_SNV CDS_variant 1 B27
Chr5:5520176 G A EMS_canonical_SNV CDS_variant 3 B18,C20,C45
Chr5:5520181 G A EMS_canonical_SNV CDS_variant 1 A4
Chr5:5520190 G A EMS_canonical_SNV CDS_variant 3 B18,C20,C45
Chr5:5520207 G A EMS_canonical_SNV CDS_variant 1 B41
Chr5:5520213 G A EMS_canonical_SNV CDS_variant 3 B126,B24,C42
Chr5:5520216 C T EMS_canonical_SNV CDS_variant 2 B137,C28
Chr5:5520219 C T EMS_canonical_SNV CDS_variant 1 A4
Chr5:5520310 G A EMS_canonical_SNV CDS_variant 2 A4,D4
Chr5:5521754 G A EMS_canonical_SNV CDS_variant 1 B24
Chr5:5522084 C T EMS_canonical_SNV CDS_variant 1 B22
Chr5:5522089 G A EMS_canonical_SNV CDS_variant 3 B100,B33,C43

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057908419.1
ATTGTAGCAAAAATATAAATAAAAATCATTCATCCCACGAAACAGACAGATTGCTTAAGCTGCATGTGCTATCTGCTTCTTTTGTATTTTCTCGCAAAGTCTCCTTCTGAATCTGTCTGATTCTCTCACTTTCTCTCTCAACACAAAGTCAGACATAAATAATTATTTTAATATTAAAATAATTGGTTAGGCAAATACAATTTCGACTCAAAGTTTGTTGAAATATGTCAGTTCCACAAGCACCAGAGCCCTCTGATTCT...

CDS

1 records

下载 CDS FASTA
LOC130985435
ATGTCAGTTCCACAAGCACCAGAGCCCTCTGATTCTTTAACTAACTGTTTCTTCACCATAAGATTCTTATCTCGCATTCGACGGCGGCTTCGATTGAAATCGCCCAACAAAGATTGCAAACCGGCGGAGGTGGCGGCGGAGCCTATAGGTACGGATATGATTACGTGTGAAGAAGCCAAAGGTGATCATCATGATCGCGACGGCGATCGTAATTGGATGGCGGCGCTGAAAAAATCCGTGAAGATGCTTCATTTTGGGAG...

Protein

1 records

下载 Protein FASTA
XP_057764402.1
MSVPQAPEPSDSLTNCFFTIRFLSRIRRRLRLKSPNKDCKPAEVAAEPIGTDMITCEEAKGDHHDRDGDRNWMAALKKSVKMLHFGSWEEKEAAARDMKKLAEEDVKRRRTMAELGVIPPLVAMVGSEVAARQRLAVQALIELANGSFTNKALMVEAGILSRLPNNMSSLEETDKRELAELLLSISGLANSQFPLNSSRIIPTTVCILESSSSIETEELCLSTLYNLSSVLDNAPILISTGVVTSLTKLSSVKETAEKSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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