Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000756`

染色体: Chr05 坐标: 5845925-5857231 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000756`
名称	SmilChr05G000756
描述	uncharacterized SmilChr05G000756
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5845925 - 5857231 / `+`

ID 对照

NCBI Gene ID	`LOC130985470`
GeneID	`130985470`
locus_tag	`-`
NCBI Name	`LOC130985470`
原始查询	`LOC130985470`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-glucan phosphorylase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823850]; symbol=PHS2; hit=AT3G46970; species=arabidopsis; confidence=high
产物	alpha-glucan phosphorylase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823850]; symbol=PHS2; hit=AT3G46970; species=arabidopsis; confidence=high
Arabidopsis	`AT3G46970` (PHS2) alpha-glucan phosphorylase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823850] identity=49.2; qcov=0.818; evalue=0; confidence=high
Rice	`Os01g0851700` (Pho2) - identity=49.3; qcov=0.812; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005980 (glycogen catabolic process); GO:0008184 (glycogen phosphorylase activity); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00343 (Phosphorylase); PF26956 (ACT_ACR_D1)
InterPro	-
eggNOG	-
NR	GeneID:130985470

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057764439.1`
2	Chloroplast	叶绿体	0.60000	`XP_057764439.1`
3	Nucleus	细胞核	0.00000	`XP_057764439.1`
4	Chromosome	染色体	0.00000	`XP_057764439.1`
5	Centromere	着丝粒	0.00000	`XP_057764439.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5846242`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	C44
`Chr5:5846242`	`GCC`	`G`	2bp_deletion	CDS_variant	1	C44
`Chr5:5846276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B111
`Chr5:5846312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,A13
`Chr5:5846571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A13,B84
`Chr5:5846572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:5846600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr5:5846749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr5:5847860`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D10
`Chr5:5847860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:5847908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:5848755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764439.1

1009 aa

504

1009

ACT_ACR_D1

Phosphorylase

PF26956 ACT_ACR_D1 82-152 aa PF00343 Phosphorylase 295-1002 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764439.1`	Pfam	`PF26956`	ACT_ACR_D1	Domain	82	152	5.1e-07	30.2	ACR family N-terminal ACT domain
`XP_057764439.1`	Pfam	`PF00343`	Phosphorylase	Family	295	1002	6.2e-296	984.1	Carbohydrate phosphorylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057908456.1
AACAGTACTGCCCTTTTAGTAACACGCACTCAACGCTCCCTTTCTGCCAAAAAGCTCCTCTTCCCACGCAAATCCTGCTCAATTCCCGACGCTCTCCGCCATTAAAATCATTCAGATGGAACTCTCTTGTTGATTTTCCACTTCGCCATTATTACCGCAATGGCTGCAACTACAATTTCGCTTATCGCGGCCAGATTGTCATGTGCTGAGCCCTACGTCCGCTCATCTCTGAATCCCAACCATCGCCGTTCAGTTTTGTT...

CDS

1 records

下载 CDS FASTA

LOC130985470
ATGGCTGCAACTACAATTTCGCTTATCGCGGCCAGATTGTCATGTGCTGAGCCCTACGTCCGCTCATCTCTGAATCCCAACCATCGCCGTTCAGTTTTGTTTAATCCTGAGCTGAAGCACTTCAGACACGGCTTCGTTTCGCACAATTTCATCTCCAAGCCTCCACGGGCATCAACTGCAAGTGGAGATACTGATATTGCCACTGACGCTGCTTCTACTGTTGCGTTCGCAAACGATGATTTGACTGACTCGACGGTCTT...

Protein

1 records

下载 Protein FASTA

XP_057764439.1
MAATTISLIAARLSCAEPYVRSSLNPNHRRSVLFNPELKHFRHGFVSHNFISKPPRASTASGDTDIATDAASTVAFANDDLTDSTVFVIRARNKIGLLGVITRVFEALGLTIQGASVEFEGDCFINNFHVTGSDGKKIEDAENLERIRKSLMEAIDGVDDISGGLMHAGGRGVVVKKSVSGLESLGERKAKAEKMLGLMDGFLKNDPMSLQKDILDHVEYTVARSRFSFDDFEAFQALSHSVRDRLIERWHDTHQHFKKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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