当前解析结果
SmilChr05G000758| 统一新 Gene ID | SmilChr05G000758 |
|---|---|
| 名称 | SmilChr05G000758 |
| 描述 | uncharacterized SmilChr05G000758 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5870566 - 5871524 / + |
| NCBI Gene ID | LOC130985472 |
|---|---|
| GeneID | 130985472 |
| locus_tag | - |
| NCBI Name | LOC130985472 |
| 原始查询 | LOC130985472 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817955]; symbol=AT2G33855; hit=AT2G33855; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817955]; symbol=AT2G33855; hit=AT2G33855; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G33855 (AT2G33855)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817955] identity=52.7; qcov=0.827; evalue=1.45e-41; confidence=medium |
| Rice | Os04g0475300- identity=40; qcov=0.894; evalue=3.53e-30; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985472 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764442.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057764442.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764442.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764442.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764442.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5870885 |
CA |
C |
1bp_deletion | frameshift_variant | 13 | A1,A13,B101,B18,B27,B57,B82,B84,C18,C23,C34,C43,C48 |
Chr5:5870917 |
AT |
A |
1bp_deletion | frameshift_variant | 17 | A1,A13,A4,B101,B18,B27,B57,B82,B84,C18,C23,C34,C36,C43,C48,C74,D4 |
Chr5:5870957 |
AAC |
A |
2bp_deletion | frameshift_variant | 86 | A14,A20,A25,A5,A7,A8,A9,B1,B103,B107,B111,B12,B123,B127,B13,B130,B132,B133,B136,B140,B19,B22,B31,B34,B35,B38,B39,B45,B46,B51,B56,B58,B6,B61,B65,B69,B7,B72,B73,B74,B75,B77,B8,B86,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,C1,C11,C12,C14,C15,C19,C21,C27,C28,C31,C35,C40,C41,C46,C49,C5,C51,C54,C61,C62,C63,C64,C66,C69,C71,C73,C76,C80,D10,D11,D6,D7 |
Chr5:5871007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,D4 |
Chr5:5871073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B54 |
Chr5:5871104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr5:5871129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C11,C69 |
Chr5:5871217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C60 |
Chr5:5871257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C74 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。