Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000763

染色体: Chr05 坐标: 5903870-5908440 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000763
名称SmilChr05G000763
描述protein DEHYDRATION-INDUCED 19-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向5903870 - 5908440 / +

ID 对照

NCBI Gene IDLOC130985478
GeneID130985478
locus_tag-
NCBI NameLOC130985478
原始查询LOC130985478

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein DEHYDRATION-INDUCED 19-like
产物protein DEHYDRATION-INDUCED 19-like
ArabidopsisAT3G05700 (AT3G05700)
Drought-responsive family protein [Source:NCBI gene (formerly Entrezgene);Acc:819739]
identity=35.1; qcov=1.08; evalue=1.7e-38; confidence=medium
RiceOs05g0562200 (OsDi19-1)
-
identity=50.9; qcov=1.03; evalue=2.5e-75; confidence=high
GO-
KEGG-
PfamPF05605 (zf-Di19); PF14571 (Di19_C)
InterPro-
eggNOG-
NRGeneID:130985478

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057764452.1
2 Nucleoplasm 核质 0.60000 XP_057764453.1
3 Cytoplasm 细胞质 0.40000 XP_057764452.1
4 Cytosol 细胞质基质 0.40000 XP_057764453.1
5 Nuclear body 核内小体 0.20000 XP_057764453.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:5904189 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:5904215 C T EMS_canonical_SNV CDS_variant 1 C74
Chr5:5904398 A AGT 2bp_insertion frameshift_variant 1 B76
Chr5:5904398 A AGT 2bp_insertion CDS_variant 1 B76
Chr5:5905818 C T EMS_canonical_SNV CDS_variant 2 A8,B35
Chr5:5905887 G A EMS_canonical_SNV CDS_variant 1 B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764452.1
228 aa
N
1
114
228
zf-Di19
Di19_C
C
PF05605 zf-Di19 41-93 aa PF14571 Di19_C 115-224 aa
XP_057764453.1
222 aa
N
1
111
222
zf-Di19
Di19_C
C
PF05605 zf-Di19 35-87 aa PF14571 Di19_C 109-218 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764452.1 Pfam PF05605 zf-Di19 Domain 41 93 1.1e-22 80.8 Drought induced 19 protein (Di19), zinc-binding
XP_057764452.1 Pfam PF14571 Di19_C Family 115 224 3.1e-26 92.6 Stress-induced protein Di19, C-terminal
XP_057764453.1 Pfam PF05605 zf-Di19 Domain 35 87 1e-22 80.8 Drought induced 19 protein (Di19), zinc-binding
XP_057764453.1 Pfam PF14571 Di19_C Family 109 218 2.3e-26 93.0 Stress-induced protein Di19, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057908469.1
AAACAGTTTGAAACTTTGTACTAACAAATATAAATACCGACATTTTCTCTCGACGTCACCTTCGTGTTCACTGCCCAAACTTTGCAAAAATTACAATTGCACTGTAAATTGTTGTCGGAAGATCAGCCTTTTAACGCAAATTAATACGTGAATCAAAATCCATCCCTCCATTCTATAGCTCAACCGTAAAGGGAAATCCATTCCATTCTCCTTCCTTCAATTCGACTCTCGATTTCTCTCATTTCTTAGGAAATAAAACC...
XM_057908470.1
ACAAATATAAATACCGACATTTTCTCTCGACGTCACCTTCGTGTTCACTGCCCAAACTTTGCAAAAATTACAATTGCACTGTAAATTGTTGTCGGAAGATCAGCCTTTTAACGCAAATTAATACGTGAATCAAAATCCATCCCTCCATTCTATAGCTCAACCGTAAAGGGAAATCCATTCCATTCTCCTTCCTTCAATTCGACTCTCGATTTCTCTCATTTCTTAGGAAATAAAACCACCATCTTTGAAGCCCCTTCTTG...

CDS

2 records

下载 CDS FASTA
LOC130985478
ATGGACTCCGATTTCTGGACGATGCGCCTCGCCGCCGCCAAGAGGCAGTTCAATAATCATCACTCTCAATTGGATCGGTTTAACATCGAAGATTTTGACGGTGAGGAAGAGGCCCGACCCGACTACCTGTGCCCGTATTGTTATGAAGAGTTGGATATAGCATCCCTTTGCTCACATCTGGAGGCTGAGCATTCGTATGAGTCCAAATCCGCCGTTTGTCCTGTTTGTTCAGTTAAAGTTGCTGGTGACATGATAAGCCA...
LOC130985478
ATGGACTCCGATTTCTGGACGATGCGCCTCGCCGCCGCCAAGAGGCAGTTCAATAATCATCACTCTCAATTGGATTTTGACGGTGAGGAAGAGGCCCGACCCGACTACCTGTGCCCGTATTGTTATGAAGAGTTGGATATAGCATCCCTTTGCTCACATCTGGAGGCTGAGCATTCGTATGAGTCCAAATCCGCCGTTTGTCCTGTTTGTTCAGTTAAAGTTGCTGGTGACATGATAAGCCATCTCACACTGCAACATGG...

Protein

2 records

下载 Protein FASTA
XP_057764452.1
MDSDFWTMRLAAAKRQFNNHHSQLDRFNIEDFDGEEEARPDYLCPYCYEELDIASLCSHLEAEHSYESKSAVCPVCSVKVAGDMISHLTLQHGHLFKMQRRGRLRKVPFPNSQALSQLGRDLREAHLQVLLGGSGFRSTSAASSTAVNDNLLCSLVLNFPTSENDDISKSLMSSLEENSAKNVAPQHMWKSSFQSCLSSEEREQRMSQAAGRAVFVQDLLASTLLADH
XP_057764453.1
MDSDFWTMRLAAAKRQFNNHHSQLDFDGEEEARPDYLCPYCYEELDIASLCSHLEAEHSYESKSAVCPVCSVKVAGDMISHLTLQHGHLFKMQRRGRLRKVPFPNSQALSQLGRDLREAHLQVLLGGSGFRSTSAASSTAVNDNLLCSLVLNFPTSENDDISKSLMSSLEENSAKNVAPQHMWKSSFQSCLSSEEREQRMSQAAGRAVFVQDLLASTLLADH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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