当前解析结果
SmilChr05G000793| 统一新 Gene ID | SmilChr05G000793 |
|---|---|
| 名称 | SmilChr05G000793 |
| 描述 | L-type lectin-domain containing receptor kinase VII.1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6219107 - 6221549 / - |
| NCBI Gene ID | LOC130985508 |
|---|---|
| GeneID | 130985508 |
| locus_tag | - |
| NCBI Name | LOC130985508 |
| 原始查询 | LOC130985508 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-type lectin-domain containing receptor kinase VII.1-like |
| 产物 | L-type lectin-domain containing receptor kinase VII.1-like |
| Arabidopsis | AT4G04960 (AT4G04960)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825837] identity=62.6; qcov=0.958; evalue=0; confidence=high |
| Rice | Os04g0531500- identity=41.6; qcov=0.958; evalue=9.06e-169; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985508 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764490.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764490.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764490.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764490.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764490.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6219298 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C22 |
Chr5:6219298 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C22 |
Chr5:6219357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,C8,D11 |
Chr5:6219486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B51 |
Chr5:6219522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr5:6219570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C74 |
Chr5:6219621 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C79 |
Chr5:6219621 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C79 |
Chr5:6220019 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B56,B96 |
Chr5:6220019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr5:6220209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B7,C11,C69 |
Chr5:6220254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B63,B83,B95,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764490.1PF00139
Lectin_legB 23-259 aa
PF00069
Pkinase 348-614 aa
PF07714
PK_Tyr_Ser-Thr 351-615 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764490.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 23 | 259 | 8.9e-65 | 219.4 | Legume lectin domain |
XP_057764490.1 |
Pfam | PF00069 |
Pkinase | Domain | 348 | 614 | 1.2e-45 | 156.7 | Protein kinase domain |
XP_057764490.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 351 | 615 | 7.9e-44 | 150.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。