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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000816

染色体: Chr05 坐标: 6385475-6391335 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000816
名称SmilChr05G000816
描述uncharacterized SmilChr05G000816
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向6385475 - 6391335 / -

ID 对照

NCBI Gene IDLOC130985528
GeneID130985528
locus_tag-
NCBI NameLOC130985528
原始查询LOC130985528

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:842417]; symbol=AT1G61240; hit=AT1G61240; species=arabidopsis; confidence=high
产物lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:842417]; symbol=AT1G61240; hit=AT1G61240; species=arabidopsis; confidence=high
ArabidopsisAT1G61240 (AT1G61240)
lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Source:NCBI gene (formerly Entrezgene);Acc:842417]
identity=67.7; qcov=0.985; evalue=6.47e-161; confidence=high
RiceOs06g0731900 (B1206D04.27-2)
-
identity=64.7; qcov=0.952; evalue=3.44e-153; confidence=high
GO-
KEGG-
PfamPF05212 (DUF707)
InterPro-
eggNOG-
NRGeneID:130985528

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057764513.1
2 Golgi stack 高尔基堆 0.20000 XP_057764513.1
3 Nucleus 细胞核 0.00000 XP_057764513.1
4 Chromosome 染色体 0.00000 XP_057764513.1
5 Centromere 着丝粒 0.00000 XP_057764513.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:6385652 C T EMS_canonical_SNV CDS_variant 4 B108,B120,B76,C53
Chr5:6385862 G A EMS_canonical_SNV CDS_variant 2 B14,B21
Chr5:6386385 C T EMS_canonical_SNV CDS_variant 2 B14,B21
Chr5:6388440 G A EMS_canonical_SNV CDS_variant 1 B93
Chr5:6388637 C T EMS_canonical_SNV CDS_variant 1 B113
Chr5:6389416 C T EMS_canonical_SNV CDS_variant 2 B111,B93
Chr5:6389434 C T EMS_canonical_SNV CDS_variant 1 C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764513.1
408 aa
N
1
204
408
DUF707
C
PF05212 DUF707 78-381 aa
XP_057764514.1
408 aa
N
1
204
408
DUF707
C
PF05212 DUF707 78-381 aa
XP_057764515.1
408 aa
N
1
204
408
DUF707
C
PF05212 DUF707 78-381 aa
XP_057764516.1
406 aa
N
1
203
406
DUF707
C
PF05212 DUF707 78-379 aa
XP_057764517.1
406 aa
N
1
203
406
DUF707
C
PF05212 DUF707 78-379 aa
XP_057764518.1
406 aa
N
1
203
406
DUF707
C
PF05212 DUF707 78-379 aa
XP_057764520.1
398 aa
N
1
199
398
DUF707
C
PF05212 DUF707 68-371 aa
XP_057764521.1
396 aa
N
1
198
396
DUF707
C
PF05212 DUF707 68-369 aa
XP_057764522.1
386 aa
N
1
193
386
DUF707
C
PF05212 DUF707 78-359 aa
XP_057764523.1
384 aa
N
1
192
384
DUF707
C
PF05212 DUF707 78-357 aa
XP_057764524.1
374 aa
N
1
187
374
DUF707
C
PF05212 DUF707 68-347 aa
XP_057764525.1
347 aa
N
1
174
347
DUF707
DUF707
C
PF05212 DUF707 78-210 aa PF05212 DUF707 211-320 aa
XP_057764526.1
345 aa
N
1
172
345
DUF707
DUF707
C
PF05212 DUF707 78-211 aa PF05212 DUF707 209-318 aa
XP_057764527.1
330 aa
N
1
165
330
DUF707
C
PF05212 DUF707 2-303 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764513.1 Pfam PF05212 DUF707 Family 78 381 1.6e-134 448.6 Protein of unknown function (DUF707)
XP_057764514.1 Pfam PF05212 DUF707 Family 78 381 1.6e-134 448.6 Protein of unknown function (DUF707)
XP_057764515.1 Pfam PF05212 DUF707 Family 78 381 1.6e-134 448.6 Protein of unknown function (DUF707)
XP_057764516.1 Pfam PF05212 DUF707 Family 78 379 4e-135 450.5 Protein of unknown function (DUF707)
XP_057764517.1 Pfam PF05212 DUF707 Family 78 379 4e-135 450.5 Protein of unknown function (DUF707)
XP_057764518.1 Pfam PF05212 DUF707 Family 78 379 4e-135 450.5 Protein of unknown function (DUF707)
XP_057764520.1 Pfam PF05212 DUF707 Family 68 371 1.5e-134 448.7 Protein of unknown function (DUF707)
XP_057764521.1 Pfam PF05212 DUF707 Family 68 369 3.7e-135 450.6 Protein of unknown function (DUF707)
XP_057764522.1 Pfam PF05212 DUF707 Family 78 359 4.7e-118 394.5 Protein of unknown function (DUF707)
XP_057764523.1 Pfam PF05212 DUF707 Family 78 357 1e-118 396.7 Protein of unknown function (DUF707)
XP_057764524.1 Pfam PF05212 DUF707 Family 68 347 9.1e-119 396.8 Protein of unknown function (DUF707)
XP_057764525.1 Pfam PF05212 DUF707 Family 78 210 1e-99 334.3 Protein of unknown function (DUF707)
XP_057764525.1 Pfam PF05212 DUF707 Family 211 320 1e-99 334.3 Protein of unknown function (DUF707)
XP_057764526.1 Pfam PF05212 DUF707 Family 78 211 2e-100 336.6 Protein of unknown function (DUF707)
XP_057764526.1 Pfam PF05212 DUF707 Family 209 318 2e-100 336.6 Protein of unknown function (DUF707)
XP_057764527.1 Pfam PF05212 DUF707 Family 2 303 2.2e-134 448.1 Protein of unknown function (DUF707)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA
XM_057908532.1
AATTACGCTTAAATCAAGGTAATCGAATCTCCTCAGAGATATAGCCAGATATTTGCTGTGTTTACCGAATCTAGTTATTTTTCATCCTTTTTAATTAAGAAATCTGATTCATCTCACGGCGTGTGGGTCCAACCATTGTAGTACAAGTGAAAGTTGGCGCTACTTATTACTCAGTATTAATTAAGATTAAGATATAGTACTAATTATCTTAGGTAGTGCTAATAAAAGCGTGGCGATCGAGTTCGTATTCGAGTTCTTGC...
XM_057908537.1
AGAAATCTGATTCATCTCACGGCGTGTGGGTCCAACCATTGTAGTACAAGTGAAAGTTGGCGCTACTTATTACTCAGTATTAATTAAGATTAAGATATAGTACTAATTATCTTAGGTAGTGCTAATAAAAGCGTGGCGATCGAGTTCGTATTCGAGTTCTTGCATTCGTATTTCTGCAAAATCCACAGCGCAGCATTTGTTTTACCAACTCCACTTCTCTCTCTCACGCAGTCACTGTTGCATACACATGAGCTTCTAAA...

CDS

14 records

下载 CDS FASTA
LOC130985528
ATGAAGGCACCCAAGTCATGGAGGTGGCAGATGAAGAGGCATCATTTCTTATTTGACCGGGTAGAACTGCAGAGAGTACTTGGAATGAAGATGAAACAACTCCCATTCATGGGAGTTGTCTGTACAGTGATGTTGTTCATCATATACAGGACCACAATTTTCCAGTATCAACAGACAGAGATGGAGTCAAAACTGGATCCTTTTTACACTTTCAAGGAATCAGGCGTGGATACCATGGAGAGTTTGCCTCGTGGTATCAT...
LOC130985528
ATGAAGGCACCCAAGTCATGGAGGTGGCAGATGAAGAGGCATCATTTCTTATTTGACCGGGTAGAACTGCAGAGAGTACTTGGAATGAAGATGAAACAACTCCCATTCATGGGAGTTGTCTGTACAGTGATGTTGTTCATCATATACAGGACCACAATTTTCCAGTATCAACAGACAGAGATGGAGTCAAAACTGGATCCTTTTTACACTTTCAAGGAATCAGGCGTGGATACCATGGAGAGTTTGCCTCGTGGTATCAT...

Protein

14 records

下载 Protein FASTA
XP_057764513.1
MKAPKSWRWQMKRHHFLFDRVELQRVLGMKMKQLPFMGVVCTVMLFIIYRTTIFQYQQTEMESKLDPFYTFKESGVDTMESLPRGIIEAKSDLELKPLWTTSSANSKFQVNAQRSINLLAMPVGIKQKKNVDTVVRKFLSENFTIVLFHYDGNLDGWWDLRWSKQATHIVALNQTKWWFAKRFLHPAIVSIYDYIFLWDEDLGVKNFHPGRYLDIVKSEGLEISQPALDPNSTGIHHRITIRNRMSTFHRRVYDARGSIK...
XP_057764514.1
MKAPKSWRWQMKRHHFLFDRVELQRVLGMKMKQLPFMGVVCTVMLFIIYRTTIFQYQQTEMESKLDPFYTFKESGVDTMESLPRGIIEAKSDLELKPLWTTSSANSKFQVNAQRSINLLAMPVGIKQKKNVDTVVRKFLSENFTIVLFHYDGNLDGWWDLRWSKQATHIVALNQTKWWFAKRFLHPAIVSIYDYIFLWDEDLGVKNFHPGRYLDIVKSEGLEISQPALDPNSTGIHHRITIRNRMSTFHRRVYDARGSIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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