Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000818`

染色体: Chr05 坐标: 6408083-6416333 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000818`
名称	SmilChr05G000818
描述	katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6408083 - 6416333 / `-`

ID 对照

NCBI Gene ID	`LOC130985532`
GeneID	`130985532`
locus_tag	`-`
NCBI Name	`LOC130985532`
原始查询	`LOC130985532`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
产物	katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
Arabidopsis	`AT5G08390` (AT5G08390) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830737] identity=40.3; qcov=1.03; evalue=0; confidence=medium
Rice	`Os04g0677700` (OsKTN80b) - identity=41.7; qcov=1.07; evalue=0; confidence=medium
GO	GO:0007019 (microtubule depolymerization); GO:0008017 (microtubule binding); GO:0008352 (katanin complex); GO:0051013 (microtubule severing)
KEGG	-
Pfam	PF00400 (WD40); PF13925 (Katanin_con80); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:130985532

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057764530.1`
2	Phragmoplast	Phragmoplast	1.00000	`XP_057764530.1`
3	Spindle	Spindle	0.40000	`XP_057764530.1`
4	Cytosol	细胞质基质	0.40000	`XP_057764530.1`
5	Golgi apparatus	高尔基体	0.40000	`XP_057764530.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6408792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C23
`Chr5:6409693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr5:6409755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,C23,D2
`Chr5:6410637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:6410709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:6410810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B120,B76,C53
`Chr5:6411492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:6411503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B79,B99
`Chr5:6411608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B80,C36
`Chr5:6411629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C23
`Chr5:6411634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C23
`Chr5:6411721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764530.1

886 aa

443

886

WD40

Beta-prop_NOL10_N

WD40

Katanin_con80

PF00400 WD40 7-44 aa PF23098 Beta-prop_NOL10_N 19-180 aa PF00400 WD40 50-86 aa PF00400 WD40 91-128 aa PF00400 WD40 134-170 aa PF00400 WD40 174-212 aa PF00400 WD40 227-253 aa PF13925 Katanin_con80 725-882 aa

XP_057764531.1

884 aa

442

884

WD40

Beta-prop_NOL10_N

WD40

Katanin_con80

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	7	44	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	19	180	8.1e-10	39.1	Nucleolar protein 10-like, N-terminal domain
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	50	86	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	91	128	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	134	170	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	174	212	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF00400`	WD40	Repeat	227	253	5.3e-53	175.9	WD domain, G-beta repeat
`XP_057764530.1`	Pfam	`PF13925`	Katanin_con80	Domain	725	882	5.1e-51	173.7	con80 domain of Katanin
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	7	44	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	19	180	7.7e-10	39.2	Nucleolar protein 10-like, N-terminal domain
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	50	86	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	91	128	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	134	170	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	174	212	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF00400`	WD40	Repeat	227	253	5.6e-53	175.9	WD domain, G-beta repeat
`XP_057764531.1`	Pfam	`PF13925`	Katanin_con80	Domain	723	880	4.9e-51	173.7	con80 domain of Katanin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908548.1
AAATAAATTTCTGCTTTCGCCATACTTTCTTTTCTTGAGGTCCACTATTGAAATCTGTCATCTGCTCTGAAAATTTTCCTTTTTCTCTTTTCCCCTTTTCCGGTTACCGCTCGACAAATCTATTCCTATCTTCTGTCGCTAAATTTTATCGTGTATACGTCAACTATCAGTAGCTGTATAGTTCTCAGCTGTAAGTTGTATTTTTCTGCCTCTGCGCCTCGATCGGTGTTTCTGCGCGGCGCCGGCGCCGGAGGCGGAAT...

XM_057908547.1
AAATAAATTTCTGCTTTCGCCATACTTTCTTTTCTTGAGGTCCACTATTGAAATCTGTCATCTGCTCTGAAAATTTTCCTTTTTCTCTTTTCCCCTTTTCCGGTTACCGCTCGACAAATCTATTCCTATCTTCTGTCGCTAAATTTTATCGTGTATACGTCAACTATCAGTAGCTGTATAGTTCTCAGCTGTAAGTTGTATTTTTCTGCCTCTGCGCCTCGATCGGTGTTTCTGCGCGGCGCCGGCGCCGGAGGCGGAAT...

CDS

2 records

下载 CDS FASTA

LOC130985532
ATGGCGAAACGCGGATATAAGCTGCAGGAATTTGTCGCACATGCGGGGAATGTAAATTGTTTGAGCTTTGGGAAAAAGAATTGCCGCGTATTTATTACAGGTGGAGATGATCAGAAAGTGAATCTTTGGTCCGTTGGCAAACCCACATCTCTAATGAGCCTGTGTGGTCACACTAGTCCGGTTGAGTCTGCAGCCTTTGATTCAGCAGAAGTTTTAGTGGTAGCTGGATCTTCTTCTGGGGCCATAAAATTGTGGGATCT...

Protein

2 records

下载 Protein FASTA

XP_057764530.1
MAKRGYKLQEFVAHAGNVNCLSFGKKNCRVFITGGDDQKVNLWSVGKPTSLMSLCGHTSPVESAAFDSAEVLVVAGSSSGAIKLWDLEETKMVRTLTGHRSYCTAVEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRTIEFHPLEFLLATGSADKTVKFWDLETFEMIGSARREAAGVRSIAFHPDGRTLFCGLDDSLKVYSWEPVVCH...

XP_057764531.1
MAKRGYKLQEFVAHAGNVNCLSFGKKNCRVFITGGDDQKVNLWSVGKPTSLMSLCGHTSPVESAAFDSAEVLVVAGSSSGAIKLWDLEETKMVRTLTGHRSYCTAVEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRTIEFHPLEFLLATGSADKTVKFWDLETFEMIGSARREAAGVRSIAFHPDGRTLFCGLDDSLKVYSWEPVVCH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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