Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000824`

染色体: Chr05 坐标: 6468274-6471953 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000824`
名称	SmilChr05G000824
描述	protein GID8 homolog
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6468274 - 6471953 / `-`

ID 对照

NCBI Gene ID	`LOC130985537`
GeneID	`130985537`
locus_tag	`-`
NCBI Name	`LOC130985537`
原始查询	`LOC130985537`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein GID8 homolog
产物	protein GID8 homolog
Arabidopsis	`AT1G61150` (AT1G61150) LisH and RanBPM domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842408] identity=87.4; qcov=0.995; evalue=1.78e-126; confidence=high
Rice	`Os03g0235100` - identity=82.5; qcov=1; evalue=5.83e-125; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF08513 (LisH); PF10607 (CTLH)
InterPro	-
eggNOG	-
NR	GeneID:130985537

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764541.1`
2	Nucleoplasm	核质	1.00000	`XP_057764542.1`
3	Cytosol	细胞质基质	1.00000	`XP_057764541.1`
4	Nucleus	细胞核	0.80000	`XP_057764542.1`
5	Vesicle	囊泡	0.40000	`XP_057764543.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6468493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:6469018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,C36,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764541.1

226 aa

113

226

LisH

CTLH

PF08513 LisH 25-51 aa PF10607 CTLH 62-204 aa

XP_057764542.1

225 aa

112

225

LisH

CTLH

PF08513 LisH 25-51 aa PF10607 CTLH 61-203 aa

XP_057764543.1

200 aa

100

200

LisH

CTLH

PF08513 LisH 1-25 aa PF10607 CTLH 36-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764541.1`	Pfam	`PF08513`	LisH	Domain	25	51	1.8e-07	31.6	LisH
`XP_057764541.1`	Pfam	`PF10607`	CTLH	Domain	62	204	4.7e-37	128.0	CTLH/CRA C-terminal to LisH motif domain
`XP_057764542.1`	Pfam	`PF08513`	LisH	Domain	25	51	1.8e-07	31.6	LisH
`XP_057764542.1`	Pfam	`PF10607`	CTLH	Domain	61	203	4.6e-37	128.1	CTLH/CRA C-terminal to LisH motif domain
`XP_057764543.1`	Pfam	`PF08513`	LisH	Domain	1	25	1.3e-06	28.8	LisH
`XP_057764543.1`	Pfam	`PF10607`	CTLH	Domain	36	178	3.5e-37	128.5	CTLH/CRA C-terminal to LisH motif domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908558.1
AGCTATTTTTAGGAGAACTGGAACACGAACTCTTTTTTGAGAAGGTCAAAATAAAATCACTGTTTTCTTTTTTTCAGAAGGAAAATACAATCTACAGGCTTCCCAACAAAATAAATGTAGAAAAATGATCTTTATTTTTCTTTTTCCTTTTCTTTTTTCTTGAATTTTCTTTTGGTGTTCCTCAAGAAATCTTACAGTGTATTTTAAAGAGTAATCAAAGAATAAGTTGCGAGTCTTGGCACTAATTTGTACGTTGCTGC...

XM_057908559.1
GGTCAAAATAAAATCACTGTTTTCTTTTTTTCAGAAGGAAAATACAATCTACAGGCTTCCCAACAAAATAAATGTAGAAAAATGATCTTTATTTTTCTTTTTCCTTTTCTTTTTTCTTGAATTTTCTTTTGGTGTTCCTCAAGAAATCTTACAGTGTATTTTAAAGAGTAATCAAAGAATAAGTTGCGAGTCTTGGCACTAATTTGTACGTTGCTGCGGACATTGCTGCAATCATTCTGTTATTTCATCTCCACCAACGC...

CDS

3 records

下载 CDS FASTA

LOC130985537
ATGGCCTCGTCGAAAAAGGTTATAACTAGGCAAGAATGGGAAAAGAGGCTCAACAGCGTTAAGATCAGGAAAGAGGATATGAATAAATTGGTGATGAATTTTCTGGTTACTGAGGGTTATGTTGAGGCTGCAGAAAGATTCCAACTAGAGTCCGGGACAGAACATATAGATCTTGCAACTATCACTGATCGTATGGCAGTAAAGAAGGCAGTACAGAGTGGTAATGTGGAGGACGCGATTGAAAAAGTTAATGATTTGAA...

LOC130985537
ATGGCCTCGTCGAAAAAGGTTATAACTAGGCAAGAATGGGAAAAGAGGCTCAACAGCGTTAAGATCAGGAAAGAGGATATGAATAAATTGGTGATGAATTTTCTGGTTACTGAGGGTTATGTTGAGGCTGCAGAAAGATTCCAACTAGAGTCCGGGACAGAACCAGATATAGATCTTGCAACTATCACTGATCGTATGGCAGTAAAGAAGGCAGTACAGAGTGGTAATGTGGAGGACGCGATTGAAAAAGTTAATGATTT...

Protein

3 records

下载 Protein FASTA

XP_057764541.1
MASSKKVITRQEWEKRLNSVKIRKEDMNKLVMNFLVTEGYVEAAERFQLESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQCFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLMGAQNQLDEKASYPRINDLSTATLEDPSL

XP_057764542.1
MASSKKVITRQEWEKRLNSVKIRKEDMNKLVMNFLVTEGYVEAAERFQLESGTEHIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQCFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLMGAQNQLDEKASYPRINDLSTATLEDPSL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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