Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000825`

染色体: Chr05 坐标: 6476716-6484187 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000825`
名称	SmilChr05G000825
描述	helicase-like transcription factor CHR28
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6476716 - 6484187 / `+`

ID 对照

NCBI Gene ID	`LOC130985539`
GeneID	`130985539`
locus_tag	`-`
NCBI Name	`LOC130985539`
原始查询	`LOC130985539`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	helicase-like transcription factor CHR28
产物	helicase-like transcription factor CHR28
Arabidopsis	`AT1G61140` (EDA16) SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842407] identity=58.7; qcov=0.656; evalue=0; confidence=high
Rice	`Os01g0779400` (P0010B10.13-1) - identity=58.7; qcov=0.652; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0046872 (metal ion binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF00176 (SNF2-rel_dom); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:130985539

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764544.1`
2	Chromosome	染色体	0.00000	`XP_057764544.1`
3	Centromere	着丝粒	0.00000	`XP_057764544.1`
4	Chromatin	染色质	0.00000	`XP_057764544.1`
5	Telomere	端粒	0.00000	`XP_057764544.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6477035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B27
`Chr5:6478545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr5:6478620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:6478629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,A24,D3
`Chr5:6479208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:6479317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,C12
`Chr5:6479794`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B70
`Chr5:6479794`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B70
`Chr5:6479884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B93,B96,C61
`Chr5:6480017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:6480071`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B43
`Chr5:6480071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764544.1

1349 aa

674

1349

SNF2-rel_dom

zf-C3HC4

Helicase_C

PF00176 SNF2-rel_dom 605-995 aa PF00097 zf-C3HC4 1036-1072 aa PF00271 Helicase_C 1192-1290 aa

XP_057764545.1

1293 aa

646

1293

SNF2-rel_dom

zf-C3HC4

Helicase_C

PF00176 SNF2-rel_dom 549-939 aa PF00097 zf-C3HC4 980-1016 aa PF00271 Helicase_C 1136-1234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764544.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	605	995	2.4e-64	218.0	SNF2-related domain
`XP_057764544.1`	Pfam	`PF00097`	zf-C3HC4	Domain	1036	1072	2.5e-06	28.0	Zinc finger, C3HC4 type (RING finger)
`XP_057764544.1`	Pfam	`PF00271`	Helicase_C	Domain	1192	1290	5.1e-22	78.9	Helicase conserved C-terminal domain
`XP_057764545.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	549	939	2.2e-64	218.1	SNF2-related domain
`XP_057764545.1`	Pfam	`PF00097`	zf-C3HC4	Domain	980	1016	2.3e-06	28.1	Zinc finger, C3HC4 type (RING finger)
`XP_057764545.1`	Pfam	`PF00271`	Helicase_C	Domain	1136	1234	4.7e-22	79.0	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908561.1
AACCTACGCCCCCCCTTTTTAATCCCGCTGCGCGCATTAGAAATCAAAATCTTCTTCAACCTACGCCCTCGCTGCAGTTGCAGCCCTTTTCATCTTTAAGTCTTTCAAAAATCTGAAATTCTGCTTAAATCTTCGTAGCAATTTCGCTGAATTTTCTGGTTGGCAATCGATTGGCATCTTCTATTGACTCCCGCTGTAGAAATACGTTGACGCTGGTGCATGCCCGTGCGCCCCATAATAGGAGTTGGAATTTACTTCTT...

XM_057908562.1
GATGATGAAGGCGGACGCTGAGGGGGGATCGTCTGGGATTATGGATGAGATGTTTAGCGCGGACGATGAGTGCGACGACGTTTACATCGATTTCGACTCTTTCTGGAGAGTCATGGGTGCGCCGCCCGCTTCGCCTTCGCAGGGTAATATAGTGGAAGATCTATCTTCTATTGATGTCCCACAAGGTTGGTGTTCCGAATTCAAATGATATATTCTTGTCAAAAGCTGAGATACCAGGATCTGGTGTACTATCACCCTCA...

CDS

2 records

下载 CDS FASTA

LOC130985539
ATGATGAAGGCGGACGCTGAGGGGGGATCGTCTGGGATTATGGATGAGATGTTTAGCGCGGACGATGAGTGCGACGACGTTTACATCGATTTCGACTCTTTCTGGAGAGTCATGGGTGCGCCGCCCGCTTCGCCTTCGCAGGGTAATATAGTGGAAGATCTATCTTCTATTGATGTCCCACAAGGTGTTCCGAATTCAAATGATATATTCTTGTCAAAAGCTGAGATACCAGGATCTGGTGTACTATCACCCTCACACAA...

LOC130985539
ATGTCCCACAAGGTTGGTGTTCCGAATTCAAATGATATATTCTTGTCAAAAGCTGAGATACCAGGATCTGGTGTACTATCACCCTCACACAACTCTGAAGCCTCAGATTCTAGGACTGGAAGTTCAGATGGCATCTCCGAATCTGTAGGGACTTCTTCTGCCATTGTGGGCGCTGGTACTCGAGAACCTTCTTCGCAGTTCGGTATTGTTGAGCACAGCTGCTCTAGAACTGTCTCTGACAGTATATCTGTTCAAGAAAA...

Protein

2 records

下载 Protein FASTA

XP_057764544.1
MMKADAEGGSSGIMDEMFSADDECDDVYIDFDSFWRVMGAPPASPSQGNIVEDLSSIDVPQGVPNSNDIFLSKAEIPGSGVLSPSHNSEASDSRTGSSDGISESVGTSSAIVGAGTREPSSQFGIVEHSCSRTVSDSISVQENGLSYSCMVGGPQTPSSYSQNDGGRALSGMSNHSDPLCLYGTSHVTHDGGSSADIDMNHDKDLIGCSRLDFHFENMEDASVIDGDRISLDVSHTESSSCEINTADIPVFIPENGGMHL...

XP_057764545.1
MSHKVGVPNSNDIFLSKAEIPGSGVLSPSHNSEASDSRTGSSDGISESVGTSSAIVGAGTREPSSQFGIVEHSCSRTVSDSISVQENGLSYSCMVGGPQTPSSYSQNDGGRALSGMSNHSDPLCLYGTSHVTHDGGSSADIDMNHDKDLIGCSRLDFHFENMEDASVIDGDRISLDVSHTESSSCEINTADIPVFIPENGGMHLFGSDDPSYASLSSGFQSLACDGGRMVNTMDEGENYSGDFVSVMPYVDVPGSHFGHH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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