当前解析结果
SmilChr05G000829| 统一新 Gene ID | SmilChr05G000829 |
|---|---|
| 名称 | SmilChr05G000829 |
| 描述 | S-linalool synthase |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6496019 - 6502593 / - |
| NCBI Gene ID | LOC130985542 |
|---|---|
| GeneID | 130985542 |
| locus_tag | - |
| NCBI Name | LOC130985542 |
| 原始查询 | LOC130985542 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-linalool synthase |
| 产物 | S-linalool synthase |
| Arabidopsis | AT1G61120 (TPS04)terpene synthase 04 [Source:NCBI gene (formerly Entrezgene);Acc:842405] identity=44.3; qcov=0.967; evalue=0; confidence=medium |
| Rice | Os04g0611800 (OsKS1)- identity=30.3; qcov=0.921; evalue=3.9e-96; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985542 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057764549.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057764549.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057764549.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764549.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764549.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6496489 |
TGG |
T |
2bp_deletion | frameshift_variant | 101 | A11,A14,A20,A25,A3,A5,A8,B10,B100,B102,B104,B105,B108,B11,B111,B112,B114,B115,B118,B121,B129,B13,B130,B131,B134,B135,B140,B15,B16,B18,B23,B25,B26,B27,B28,B3,B30,B40,B44,B47,B51,B52,B55,B56,B6,B62,B63,B65,B68,B69,B72,B75,B76,B77,B78,B81,B89,B95,B99,C1,C12,C13,C19,C23,C24,C27,C29,C3,C32,C35,C36,C38,C40,C41,C42,C43,C45,C46,C47,C50,C51,C52,C53,C55,C56,C59,C6,C65,C67,C68,C71,C72,C74,C77,C8,C82,C86,D10,D2,D7,D8 |
Chr5:6496655 |
TG |
* |
1bp_deletion | CDS_variant | 2 | A10,B127 |
Chr5:6496680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr5:6496713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr5:6496729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B47 |
Chr5:6496753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:6496761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:6496774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:6496908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr5:6497150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C73,D6 |
Chr5:6497160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B119,B140 |
Chr5:6497376 |
C |
CTA |
2bp_insertion | frameshift_variant | 6 | B103,B122,B71,C24,C37,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764549.1PF01397
Terpene_synth 206-407 aa
PF03936
Terpene_synth_C 477-706 aa
PF19086
Terpene_syn_C_2 518-704 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764549.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 206 | 407 | 5.7e-35 | 121.4 | Terpene synthase, N-terminal domain |
XP_057764549.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 477 | 706 | 5.3e-53 | 180.5 | Terpene synthase family, metal binding domain |
XP_057764549.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 518 | 704 | 9.8e-35 | 120.8 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。