Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000841`

染色体: Chr05 坐标: 6656601-6659103 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000841`
名称	SmilChr05G000841
描述	probable polyol transporter 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6656601 - 6659103 / `+`

ID 对照

NCBI Gene ID	`LOC130985552`
GeneID	`130985552`
locus_tag	`-`
NCBI Name	`LOC130985552`
原始查询	`LOC130985552`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable polyol transporter 4
产物	probable polyol transporter 4
Arabidopsis	`AT2G20780` (AT2G20780) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816607] identity=67.9; qcov=0.956; evalue=0; confidence=high
Rice	`Os04g0529800` - identity=65.6; qcov=0.974; evalue=0; confidence=high
GO	GO:0015144 (carbohydrate transmembrane transporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:130985552

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057764561.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057764561.1`
3	Cell membrane	细胞膜	0.40000	`XP_057764563.1`
4	Nucleus	细胞核	0.00000	`XP_057764561.1`
5	Chromosome	染色体	0.00000	`XP_057764561.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6658065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:6658537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B16,C30,D4
`Chr5:6658587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C73,D11,D6
`Chr5:6658617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C5,C61
`Chr5:6658621`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	C12
`Chr5:6658621`	`CCT`	`C`	2bp_deletion	CDS_variant	1	C12
`Chr5:6658781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B9,C26
`Chr5:6658882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B38,B39
`Chr5:6658894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764561.1

514 aa

257

514

Sugar_tr

MFS_1

PF00083 Sugar_tr 47-491 aa PF07690 MFS_1 53-440 aa

XP_057764562.1

514 aa

257

514

Sugar_tr

MFS_1

PF00083 Sugar_tr 47-491 aa PF07690 MFS_1 53-440 aa

XP_057764563.1

499 aa

250

499

MFS_1

Sugar_tr

PF07690 MFS_1 46-425 aa PF00083 Sugar_tr 46-476 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764561.1`	Pfam	`PF00083`	Sugar_tr	Family	47	491	2e-110	370.5	Sugar (and other) transporter
`XP_057764561.1`	Pfam	`PF07690`	MFS_1	Family	53	440	5.9e-30	105.1	Major Facilitator Superfamily
`XP_057764562.1`	Pfam	`PF00083`	Sugar_tr	Family	47	491	2e-110	370.5	Sugar (and other) transporter
`XP_057764562.1`	Pfam	`PF07690`	MFS_1	Family	53	440	5.9e-30	105.1	Major Facilitator Superfamily
`XP_057764563.1`	Pfam	`PF07690`	MFS_1	Family	46	425	2.8e-29	102.8	Major Facilitator Superfamily
`XP_057764563.1`	Pfam	`PF00083`	Sugar_tr	Family	46	476	9.9e-107	358.3	Sugar (and other) transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908579.1
TAAATGAGCATTCCATTCCTGGAATAGAAGGAGGGAAGCAGACGTCCAACTAACATTTCCCTTACAAGAAGTGTATAGATATTGGCATGTGCAAAATCAAGGCAAGCGTCAAGCCGTCAACAGATCCTATCAACAAAATCAAAATGCATTGAGAAGAGAAACAAGCTATGGCTATTCATCCGCAGCTCCATCGCAAAGTCAAATATTGACTCATATTTTGATTACACAGATTCATTTTGACCTATATTCATTGTTCCTTC...

XM_057908578.1
CTAACATTTCCCTTACAAGAAGTGTATAGATATTGGCATGTGCAAAATCAAGGCAAGGTTAGTATGTTTAATCGGATACATTAGCCCGCATTTATCTCGTGCCTATTTCATTTTCTCTTTCCATTTCTACTATATTCCTTTCAGCGTCAAGCCGTCAACAGATCCTATCAACAAAATCAAAATGCATTGAGAAGAGAAACAAGCTATGGCTATTCATCCGCAGCTCCATCGCAAAGTCAAATATTGACTCATATTTTGAT...

CDS

3 records

下载 CDS FASTA

LOC130985552
ATGGGGCTCCAAGAAAATGGGAAGGGGTCTGTGAGAAAGTACAGAAGCATGGACGAGGATGTTTCTGTATCACATCCATTCCAAGAAAATGGGAGCATCAGAAATAGGAGGAGCAGCAGCAGCAACTATGTCATGGCCTGCGCGATCTTCGCCTCTCTCAATTCCGTGCTTCTTGGCTACGATGTGGGGGTAATGAGTGGAGCCATTTTGTTCATTCAAGAGGACTTAAAGATCAGTGAAGTTCAAGAAGAAGTTTTTGT...

Protein

3 records

下载 Protein FASTA

XP_057764561.1
MGLQENGKGSVRKYRSMDEDVSVSHPFQENGSIRNRRSSSSNYVMACAIFASLNSVLLGYDVGVMSGAILFIQEDLKISEVQEEVFVGILSIISLLGSLAGGKTSDAIGRKWTIAFAAIVFQSGAGVMALASSFTVLMMGRLLAGIGIGFGVMITPVYIAEIAPTVTRGSLTSFPEIFTNLGILLGYISNYAFSGLPAHINWRIMLAVGIIPSIFIGGALFVIPESPRWLVMQNRIDEARNVLLKTNDNAGEVEGKLAEI...

XP_057764562.1
MGLQENGKGSVRKYRSMDEDVSVSHPFQENGSIRNRRSSSSNYVMACAIFASLNSVLLGYDVGVMSGAILFIQEDLKISEVQEEVFVGILSIISLLGSLAGGKTSDAIGRKWTIAFAAIVFQSGAGVMALASSFTVLMMGRLLAGIGIGFGVMITPVYIAEIAPTVTRGSLTSFPEIFTNLGILLGYISNYAFSGLPAHINWRIMLAVGIIPSIFIGGALFVIPESPRWLVMQNRIDEARNVLLKTNDNAGEVEGKLAEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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