Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000848`

染色体: Chr05 坐标: 6690134-6693033 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000848`
名称	SmilChr05G000848
描述	uncharacterized SmilChr05G000848
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6690134 - 6693033 / `+`

ID 对照

NCBI Gene ID	`LOC130985560`
GeneID	`130985560`
locus_tag	`-`
NCBI Name	`LOC130985560`
原始查询	`LOC130985560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os10g0498200; species=rice; confidence=high
产物	hit=Os10g0498200; species=rice; confidence=high
Arabidopsis	`AT4G02340` (AT4G02340) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828063] identity=37.5; qcov=1.03; evalue=7.17e-69; confidence=medium
Rice	`Os10g0498200` - identity=57.6; qcov=0.99; evalue=2.92e-131; confidence=high
GO	GO:0016787 (hydrolase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF03096 (Ndr); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130985560

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057764571.1`
2	Cytosol	细胞质基质	0.80000	`XP_057764571.1`
3	Nucleus	细胞核	0.20000	`XP_057764572.1`
4	Chromosome	染色体	0.00000	`XP_057764571.1`
5	Centromere	着丝粒	0.00000	`XP_057764571.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6690420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C47,C82
`Chr5:6690522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:6690543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:6690626`	`T`	`TC`	1bp_insertion	frameshift_variant	30	A10,A16,B101,B105,B110,B113,B120,B124,B30,B38,B39,B46,B50,B6,B69,B76,B92,B97,C16,C21,C29,C33,C54,C56,C63,C65,C7,C70,C76,D9
`Chr5:6690627`	`T`	`TC`	1bp_insertion	frameshift_variant	30	A10,A16,B101,B105,B110,B113,B120,B124,B30,B38,B39,B46,B50,B6,B69,B76,B92,B97,C16,C21,C29,C33,C54,C56,C63,C65,C7,C70,C76,D9
`Chr5:6692090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,B89
`Chr5:6692126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B24,B71,C1,C85
`Chr5:6692130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C73,D11,D6
`Chr5:6692156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B99,C87,D10
`Chr5:6692333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B99,C87,D10
`Chr5:6692345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B111,C36
`Chr5:6692386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B111,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764571.1

339 aa

170

339

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Ndr

PF12146 Hydrolase_4 27-127 aa PF00561 Abhydrolase_1 27-323 aa PF12697 Abhydrolase_6 29-328 aa PF03096 Ndr 80-126 aa

XP_057764572.1

312 aa

156

312

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Ndr

PF12146 Hydrolase_4 27-127 aa PF00561 Abhydrolase_1 27-296 aa PF12697 Abhydrolase_6 29-301 aa PF03096 Ndr 80-126 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764571.1`	Pfam	`PF12146`	Hydrolase_4	Domain	27	127	4e-11	43.4	Serine aminopeptidase, S33
`XP_057764571.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	27	323	2e-31	110.3	alpha/beta hydrolase fold
`XP_057764571.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	29	328	2.9e-17	64.8	Alpha/beta hydrolase family
`XP_057764571.1`	Pfam	`PF03096`	Ndr	Domain	80	126	7e-06	25.7	Ndr family
`XP_057764572.1`	Pfam	`PF12146`	Hydrolase_4	Domain	27	127	2.4e-11	44.1	Serine aminopeptidase, S33
`XP_057764572.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	27	296	5.5e-34	118.6	alpha/beta hydrolase fold
`XP_057764572.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	29	301	3.6e-18	67.7	Alpha/beta hydrolase family
`XP_057764572.1`	Pfam	`PF03096`	Ndr	Domain	80	126	5.8e-06	25.9	Ndr family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908588.1
CATCCCTACCCAGATCTTGTTTTAATCACTAAAATCGTTGATATTGCTGTCACTAAGCTTCAGCCCCTACATTTTCATTCTCATTCTATATATATCAAATTACTTACAACGTACAATCTCAGTGGAAAAAGCTAAGATACAGAAAATTGGAGTGCAACATAGGCACCTCAAATATCCGCATCAACGAAAACAAGTAGAAAAGTAATTTGCGTCGAGAAATGGACAAGATAGAGCACAAATACGTGGAAATCAACGGTCTG...

XM_057908589.1
CATCCCTACCCAGATCTTGTTTTAATCACTAAAATCGTTGATATTGCTGTCACTAAGCTTCAGCCCCTACATTTTCATTCTCATTCTATATATATCAAATTACTTACAACGTACAATCTCAGTGGAAAAAGCTAAGATACAGAAAATTGGAGTGCAACATAGGCACCTCAAATATCCGCATCAACGAAAACAAGTAGAAAAGTAATTTGCGTCGAGAAATGGACAAGATAGAGCACAAATACGTGGAAATCAACGGTCTG...

CDS

2 records

下载 CDS FASTA

LOC130985560
ATGGACAAGATAGAGCACAAATACGTGGAAATCAACGGTCTGAAGCACCACGTGGCCGAGATCGGCGGCGATTCATCGCCGGCGGTGGTGTTCCTACACGGATTCCCGGAAATATGGTACTCGTGGCGCCACCAGATGATCGCCGTTGCGGAAGCTGGCTTCAGAGCCATCGCGCCCGATTACAGAGGGTACGGGCTATCCGACCCGCCGCCCCAACCCGACAAAGCCATCTTCTTGGACCTCGTCGATGACCTCCTCGC...

Protein

2 records

下载 Protein FASTA

XP_057764571.1
MDKIEHKYVEINGLKHHVAEIGGDSSPAVVFLHGFPEIWYSWRHQMIAVAEAGFRAIAPDYRGYGLSDPPPQPDKAIFLDLVDDLLALLDALSLSKVILIGKDFGAMVASLFTLLHQDRVLSFVTIGVPFMPPRPPSHHNDLPEGFYITRWKEPGRAEADFARLDAKTVVRNVYILFSRSEIPIANENQEIMDLVEPSTPLPSWFTEDDLATYRALYEKSGFRTALQVPYRYHEIKYKTLVSAHPKFEMMISGTSYSRSM...

XP_057764572.1
MDKIEHKYVEINGLKHHVAEIGGDSSPAVVFLHGFPEIWYSWRHQMIAVAEAGFRAIAPDYRGYGLSDPPPQPDKAIFLDLVDDLLALLDALSLSKVILIGKDFGAMVASLFTLLHQDRVLSFVTIGVPFMPPRPPSHHNDLPEGFYITRWKEPGRAEADFARLDAKTVVRNVYILFSRSEIPIANENQEIMDLVEPSTPLPSWFTEDDLATYRALYEKSGFRTALQVPYRSMGTQLDIPDPKVEVPALLIMGEKDYVLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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