Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000850`

染色体: Chr05 坐标: 6697779-6706518 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000850`
名称	SmilChr05G000850
描述	wings apart-like protein 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6697779 - 6706518 / `-`

ID 对照

NCBI Gene ID	`LOC130985561`
GeneID	`130985561`
locus_tag	`-`
NCBI Name	`LOC130985561`
原始查询	`LOC130985561`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	wings apart-like protein 2
产物	wings apart-like protein 2
Arabidopsis	`AT1G11060` (AT1G11060) WAPL (Wings apart-like protein regulation of heterochromatin) protein [Source:NCBI gene (formerly Entrezgene);Acc:837647] identity=45.3; qcov=0.813; evalue=0; confidence=high
Rice	`Os10g0497000` - identity=43.5; qcov=0.78; evalue=1.95e-170; confidence=medium
GO	GO:0060623 (regulation of chromosome condensation); GO:0071922 (GO:0071922)
KEGG	-
Pfam	PF07814 (WAPL)
InterPro	-
eggNOG	-
NR	GeneID:130985561

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764573.1`
2	Chromosome	染色体	0.00000	`XP_057764573.1`
3	Centromere	着丝粒	0.00000	`XP_057764573.1`
4	Chromatin	染色质	0.00000	`XP_057764573.1`
5	Telomere	端粒	0.00000	`XP_057764573.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6697987`	`C`	`CT`	1bp_insertion	frameshift_variant	12	A9,B123,B133,B90,B92,C1,C20,C37,C58,C64,C66,C75
`Chr5:6698015`	`TC`	`T`	1bp_deletion	frameshift_variant	15	A14,B114,B118,B132,B133,B5,B54,B57,B64,C26,C57,C66,C86,C87,D1
`Chr5:6698036`	`T`	`TC`	1bp_insertion	frameshift_variant	2	B38,B39
`Chr5:6698036`	`T`	`TC`	1bp_insertion	CDS_variant	2	B38,B39
`Chr5:6698170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B2
`Chr5:6698625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B73,B94,D3
`Chr5:6698802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B133,C1,C64,C66
`Chr5:6701207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D8
`Chr5:6701224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr5:6701342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:6701690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:6701922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C73,D11,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764573.1

1004 aa

502

1004

WAPL

PF07814 WAPL 246-862 aa

XP_057764574.1

1002 aa

501

1002

WAPL

PF07814 WAPL 246-862 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764573.1`	Pfam	`PF07814`	WAPL	Family	246	862	5.7e-45	154.5	Wings apart-like protein regulation of heterochromatin
`XP_057764574.1`	Pfam	`PF07814`	WAPL	Family	246	862	5.6e-46	157.8	Wings apart-like protein regulation of heterochromatin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908590.1
AGAAACAGAAAAGACGGACCTAAAAGAATGACGACGCTGCGATTTCATCAATCGTTCAAGATATATTGGGTTACTGAAAATACCCCTAGCATCAATTTTTTTTATTTGGATCTTTCCAAATCAGTAAGTATTTCCCTTTTATTTTTAGTCTGAAAATTCTGTTACTCATCCTTCAAATTTCCAAATTCCAATTTCCCGTTGTTGAGTAGCATCGTCGAAGCGGAGGAGTGCTGAGGGGCGTTTCCTGTTTTGCCCCTCCC...

XM_057908591.1
ACGGACCTAAAAGAATGACGACGCTGCGATTTCATCAATCGTTCAAGATATATTGGGTTACTGAAAATACCCCTAGCATCAATTTTTTTTATTTGGATCTTTCCAAATCAGTAAGTATTTCCCTTTTATTTTTAGTCTGAAAATTCTGTTACTCATCCTTCAAATTTCCAAATTCCAATTTCCCGTTGTTGAGTAGCATCGTCGAAGCGGAGGAGTGCTGAGGGGCGTTTCCTGTTTTGCCCCTCCCATCGGAAATTATT...

CDS

2 records

下载 CDS FASTA

LOC130985561
ATGATAGTTAGGACATACGGCCGGCGGAGTAGAGGACTGACAAGGAACTACTCCGACGTCGTTTCGGAGTCGCCTTCCCAGGAATGCCCCCAAGATGTTTACAATTTTACATTTTCGTCCCAGGACTCCGCTCACTGTCACTGGTCCAATCCCTACAGTTTCGATTCTTCGCAGGAGCCGAGGCAATTGACGATTTTGCCCTCAAGAAGGGCTGCTGGTTGCGGGGATAATGGTGGACGGAAGAAAGTGAAGCTGATCGG...

Protein

2 records

下载 Protein FASTA

XP_057764573.1
MIVRTYGRRSRGLTRNYSDVVSESPSQECPQDVYNFTFSSQDSAHCHWSNPYSFDSSQEPRQLTILPSRRAAGCGDNGGRKKVKLIGVDSEPYGLSSSQESKDYPVVEISDGESEEPRFVKKVNYDPFEYDSSQELEECSVLPRKRSVENGVFGFSENAGSWKPKLKDVDSDTYGLNSSLGLRELEISERRVCRGSRDSWDIDGVSRNHKKNCKEEIGVLDKKKTKKNKKKMKTEEVGLGDLVLTSTLMETQEFGEMMEH...

XP_057764574.1
MIVRTYGRRSRGLTRNYSDVVSESPSQECPQDVYNFTFSSQDSAHCHWSNPYSFDSSQEPRQLTILPSRRAAGCGDNGGRKKVKLIGVDSEPYGLSSSQESKDYPVVEISDGESEEPRFVKKVNYDPFEYDSSQELEECSVLPRKRSVENGVFGFSENAGSWKPKLKDVDSDTYGLNSSLGLRELEISERRVCRGSRDSWDIDGVSRNHKKNCKEEIGVLDKKKTKKNKKKMKTEEVGLGDLVLTSTLMETQEFGEMMEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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