Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000861`

染色体: Chr05 坐标: 6839776-6844177 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000861`
名称	SmilChr05G000861
描述	internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6839776 - 6844177 / `-`

ID 对照

NCBI Gene ID	`LOC130985570`
GeneID	`130985570`
locus_tag	`-`
NCBI Name	`LOC130985570`
原始查询	`LOC130985570`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like
产物	internal alternative NAD(P)H-ubiquinone oxidoreductase A1%2C mitochondrial-like
Arabidopsis	`AT2G29990` (NDA2) alternative NAD(P)H dehydrogenase 2 [Source:NCBI gene (formerly Entrezgene);Acc:817549] identity=69.4; qcov=0.888; evalue=0; confidence=high
Rice	`Os07g0564500` (OJ1112_E08.115) - identity=77.6; qcov=0.826; evalue=0; confidence=high
GO	GO:0003954 (NADH dehydrogenase activity); GO:0006116 (GO:0006116)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00070 (Pyr_redox); PF07992 (Pyr_redox_2); PF22366 (NDH2_C)
InterPro	-
eggNOG	-
NR	GeneID:130985570

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057764594.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057764594.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057764594.1`
4	Nucleus	细胞核	0.00000	`XP_057764594.1`
5	Chromosome	染色体	0.00000	`XP_057764594.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6839999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:6840182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B35,C5,D7
`Chr5:6840234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B41,B79,C3,C59,D2
`Chr5:6840260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr5:6840534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B103,C47
`Chr5:6841626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr5:6841642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:6842055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B37,B84
`Chr5:6842058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B45,B9
`Chr5:6842178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B36
`Chr5:6842269`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B101
`Chr5:6842269`	`GC`	`G`	1bp_deletion	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764594.1

545 aa

272

545

Pyr_redox_2

Pyr_redox

NDH2_C

PF07992 Pyr_redox_2 118-446 aa PF00070 Pyr_redox 283-355 aa PF22366 NDH2_C 475-541 aa

XP_057764595.1

545 aa

272

545

Pyr_redox_2

Pyr_redox

NDH2_C

PF07992 Pyr_redox_2 118-446 aa PF00070 Pyr_redox 283-355 aa PF22366 NDH2_C 475-541 aa

XP_057764596.1

545 aa

272

545

Pyr_redox_2

Pyr_redox

NDH2_C

PF07992 Pyr_redox_2 118-446 aa PF00070 Pyr_redox 283-355 aa PF22366 NDH2_C 475-541 aa

XP_057764597.1

545 aa

272

545

Pyr_redox_2

Pyr_redox

NDH2_C

PF07992 Pyr_redox_2 118-446 aa PF00070 Pyr_redox 283-355 aa PF22366 NDH2_C 475-541 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764594.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	118	446	3.7e-51	175.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764594.1`	Pfam	`PF00070`	Pyr_redox	Domain	283	355	2e-08	35.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764594.1`	Pfam	`PF22366`	NDH2_C	Domain	475	541	1e-15	58.4	NDH2 C-terminal domain
`XP_057764595.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	118	446	3.7e-51	175.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764595.1`	Pfam	`PF00070`	Pyr_redox	Domain	283	355	2e-08	35.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764595.1`	Pfam	`PF22366`	NDH2_C	Domain	475	541	1e-15	58.4	NDH2 C-terminal domain
`XP_057764596.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	118	446	3.7e-51	175.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764596.1`	Pfam	`PF00070`	Pyr_redox	Domain	283	355	2e-08	35.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764596.1`	Pfam	`PF22366`	NDH2_C	Domain	475	541	1e-15	58.4	NDH2 C-terminal domain
`XP_057764597.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	118	446	3.7e-51	175.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764597.1`	Pfam	`PF00070`	Pyr_redox	Domain	283	355	2e-08	35.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057764597.1`	Pfam	`PF22366`	NDH2_C	Domain	475	541	1e-15	58.4	NDH2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908611.1
TTATTACTATTATTATTATTAATTTTTTGAAGCGAGCCTTAAAATCATTTATTAATTTTGCATTTTCCGCTAATTCCAGTATTCCACTTGCCCACATTGAACCATAGGGTTTATAGCCATCGTATCTATATAACTTATTTTGTACGTATATACATCTCCATTACCATTTTAGCATTTTTACAAATTTGACAGTAAGAAAATTTTCAGGCTGCGGATCCAGCAGACACACGGAGATTGTTTTTCGTATTCTTTTTTTCCCT...

XM_057908612.1
AAAATCATTTATTAATTTTGCATTTTCCGCTAATTCCAGTATTCCACTTGCCCACATTGAACCATAGGGTTTATAGCCATCGTATCTATATAACTTATTTTGTACGTATATACATCTCCATTACCATTTTAGCATTTTTACAAATTTGACAGTAAGAAAATTTTCAGGCTGCGGATCCAGCAGTGAAAATTTGTAGAGAATTCTAATTCAGTTCAACTTGCTATCATCAGAAGGCACTAACAGTATTAGTCTTTGCGCTC...

CDS

4 records

下载 CDS FASTA

LOC130985570
ATGGCGTTGGCGAGAATAGCTAGAAATTGTTGCCAACAATCAGGAGGTGCCACAGGTAGATATGCTAGAGCAAGGGACATGCTCAGTGAGGAATCATCTTCTTTGAGCAAGTCTCATTCACCTTTCAGTGGGAGCTTCACAGCTTTTCAACAAAATGTTAAACCACGTAGCAATCTTCCATTTTTCTCGAGCATTGGCAGGTTGCCCGCTGCAACTTTTGGAAGTAGGGGTGTGAGGATGACCCCTCAAAATGAATATGC...

Protein

4 records

下载 Protein FASTA

XP_057764594.1
MALARIARNCCQQSGGATGRYARARDMLSEESSSLSKSHSPFSGSFTAFQQNVKPRSNLPFFSSIGRLPAATFGSRGVRMTPQNEYAHAQTAVEESDSEYQNLKYPTLEATKPGEKPRVVVIGSGWAACRFLKGLDTKLYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSQIQTALAKDPNSYFFLASCNGLDTDKREVFCETAVDGGKPYNFKVAYDKLVIASGAEPLTFGIKGVEEHAFFLREVFHAQEIRKR...

XP_057764595.1
MALARIARNCCQQSGGATGRYARARDMLSEESSSLSKSHSPFSGSFTAFQQNVKPRSNLPFFSSIGRLPAATFGSRGVRMTPQNEYAHAQTAVEESDSEYQNLKYPTLEATKPGEKPRVVVIGSGWAACRFLKGLDTKLYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSQIQTALAKDPNSYFFLASCNGLDTDKREVFCETAVDGGKPYNFKVAYDKLVIASGAEPLTFGIKGVEEHAFFLREVFHAQEIRKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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