当前解析结果
SmilChr05G000866| 统一新 Gene ID | SmilChr05G000866 |
|---|---|
| 名称 | SmilChr05G000866 |
| 描述 | beta-galactosidase 6-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6864522 - 6874361 / - |
| NCBI Gene ID | LOC130985577 |
|---|---|
| GeneID | 130985577 |
| locus_tag | - |
| NCBI Name | LOC130985577 |
| 原始查询 | LOC130985577 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 6-like |
| 产物 | beta-galactosidase 6-like |
| Arabidopsis | AT2G28470 (BGAL8)beta-galactosidase 8 [Source:NCBI gene (formerly Entrezgene);Acc:817395] identity=53.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os03g0255100 (OsBgal8)- identity=53.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985577 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057764605.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057764604.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057764604.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764605.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764605.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6864819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B27,B4,B54 |
Chr5:6865032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr5:6865159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C19 |
Chr5:6865176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B79,C54 |
Chr5:6865180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:6865535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B24 |
Chr5:6865635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:6866175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C61,C73,D6 |
Chr5:6866176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:6866908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:6866964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,C43 |
Chr5:6868920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764604.1PF01301
Glyco_hydro_35 41-344 aa
PF02449
Glyco_hydro_42 62-193 aa
PF17834
GHD 368-424 aa
PF21467
BetaGal_gal-bd 631-719 aa
PF02140
SUEL_Lectin 774-849 aa
XP_057764605.1PF01301
Glyco_hydro_35 1-187 aa
PF17834
GHD 211-267 aa
PF21467
BetaGal_gal-bd 474-562 aa
PF02140
SUEL_Lectin 617-692 aa
XP_057764606.1PF01301
Glyco_hydro_35 1-187 aa
PF17834
GHD 211-267 aa
PF21467
BetaGal_gal-bd 474-562 aa
PF02140
SUEL_Lectin 617-692 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764604.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 41 | 344 | 8.8e-111 | 371.2 | Glycosyl hydrolases family 35 |
XP_057764604.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 62 | 193 | 0.00014 | 22.1 | Beta-galactosidase |
XP_057764604.1 |
Pfam | PF17834 |
GHD | Domain | 368 | 424 | 2.4e-24 | 85.5 | Beta-sandwich domain in beta galactosidase |
XP_057764604.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 631 | 719 | 1.9e-24 | 86.3 | Beta-galactosidase, galactose-binding domain |
XP_057764604.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 774 | 849 | 2.5e-15 | 57.3 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057764605.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 1 | 187 | 4e-53 | 181.8 | Glycosyl hydrolases family 35 |
XP_057764605.1 |
Pfam | PF17834 |
GHD | Domain | 211 | 267 | 2.1e-24 | 85.7 | Beta-sandwich domain in beta galactosidase |
XP_057764605.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 474 | 562 | 1.1e-24 | 87.0 | Beta-galactosidase, galactose-binding domain |
XP_057764605.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 617 | 692 | 1.8e-15 | 57.8 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057764606.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 1 | 187 | 4e-53 | 181.8 | Glycosyl hydrolases family 35 |
XP_057764606.1 |
Pfam | PF17834 |
GHD | Domain | 211 | 267 | 2.1e-24 | 85.7 | Beta-sandwich domain in beta galactosidase |
XP_057764606.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 474 | 562 | 1.1e-24 | 87.0 | Beta-galactosidase, galactose-binding domain |
XP_057764606.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 617 | 692 | 1.8e-15 | 57.8 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。