当前解析结果
SmilChr05G000873| 统一新 Gene ID | SmilChr05G000873 |
|---|---|
| 名称 | SmilChr05G000873 |
| 描述 | uncharacterized SmilChr05G000873 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6924998 - 6926946 / + |
| NCBI Gene ID | LOC130985587 |
|---|---|
| GeneID | 130985587 |
| locus_tag | - |
| NCBI Name | LOC130985587 |
| 原始查询 | LOC130985587 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cotton fiber (DUF761) [Source:NCBI gene (formerly Entrezgene);Acc:842420]; symbol=AT1G61260; hit=AT1G61260; species=arabidopsis; confidence=medium |
| 产物 | cotton fiber (DUF761) [Source:NCBI gene (formerly Entrezgene);Acc:842420]; symbol=AT1G61260; hit=AT1G61260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G61260 (AT1G61260)cotton fiber (DUF761) [Source:NCBI gene (formerly Entrezgene);Acc:842420] identity=41; qcov=1.09; evalue=2.99e-71; confidence=medium |
| Rice | Os07g0563400 (OJ1720_F04.106)- identity=52.9; qcov=0.476; evalue=2.62e-42; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF05553 (DUF761); PF14364 (DUF4408) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985587 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764631.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057764631.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057764631.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764631.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764631.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6925267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:6925452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr5:6925465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr5:6925509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:6925522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C7 |
Chr5:6925627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B134,B47,C5,D7 |
Chr5:6925752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:6925772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:6925807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:6925831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr5:6926332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B36,B57,C34,C36 |
Chr5:6926521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764631.1PF14364
DUF4408 38-70 aa
PF05553
DUF761 293-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764631.1 |
Pfam | PF14364 |
DUF4408 | Family | 38 | 70 | 6.8e-16 | 58.5 | Domain of unknown function (DUF4408) |
XP_057764631.1 |
Pfam | PF05553 |
DUF761 | Family | 293 | 328 | 2.2e-16 | 59.8 | Cotton fibre expressed protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。