当前解析结果
SmilChr05G000930| 统一新 Gene ID | SmilChr05G000930 |
|---|---|
| 名称 | SmilChr05G000930 |
| 描述 | transcription factor bHLH112-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7452640 - 7455212 / - |
| NCBI Gene ID | LOC130985645 |
|---|---|
| GeneID | 130985645 |
| locus_tag | - |
| NCBI Name | LOC130985645 |
| 原始查询 | LOC130985645 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor bHLH112-like |
| 产物 | transcription factor bHLH112-like |
| Arabidopsis | AT1G61660 (AT1G61660)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842462] identity=41.3; qcov=1.13; evalue=2.41e-67; confidence=medium |
| Rice | Os04g0631600 (OsbHLH068)- identity=68.8; qcov=0.402; evalue=4.91e-57; confidence=low |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985645 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764698.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057764698.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057764698.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057764698.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057764698.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7453069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,C13,C83,C84 |
Chr5:7453070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,C13,C83,C84 |
Chr5:7453115 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B23 |
Chr5:7453115 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B23 |
Chr5:7453583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B37,C37,C8 |
Chr5:7454078 |
T |
TTA |
2bp_insertion | frameshift_variant | 1 | B115 |
Chr5:7454078 |
T |
TTA |
2bp_insertion | CDS_variant | 1 | B115 |
Chr5:7454178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C59,C74,D2 |
Chr5:7454199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B80,D2 |
Chr5:7454281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr5:7454374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr5:7454760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。