Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000930

染色体: Chr05 坐标: 7452640-7455212 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000930
名称SmilChr05G000930
描述transcription factor bHLH112-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向7452640 - 7455212 / -

ID 对照

NCBI Gene IDLOC130985645
GeneID130985645
locus_tag-
NCBI NameLOC130985645
原始查询LOC130985645

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述transcription factor bHLH112-like
产物transcription factor bHLH112-like
ArabidopsisAT1G61660 (AT1G61660)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842462]
identity=41.3; qcov=1.13; evalue=2.41e-67; confidence=medium
RiceOs04g0631600 (OsbHLH068)
-
identity=68.8; qcov=0.402; evalue=4.91e-57; confidence=low
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985645

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057764698.1
2 Chromosome 染色体 0.00000 XP_057764698.1
3 Centromere 着丝粒 0.00000 XP_057764698.1
4 Chromatin 染色质 0.00000 XP_057764698.1
5 Telomere 端粒 0.00000 XP_057764698.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:7453069 C T EMS_canonical_SNV CDS_variant 4 A6,C13,C83,C84
Chr5:7453070 C T EMS_canonical_SNV CDS_variant 4 A6,C13,C83,C84
Chr5:7453115 CG C 1bp_deletion frameshift_variant 1 B23
Chr5:7453115 CG C 1bp_deletion CDS_variant 1 B23
Chr5:7453583 C T EMS_canonical_SNV CDS_variant 4 B109,B37,C37,C8
Chr5:7454078 T TTA 2bp_insertion frameshift_variant 1 B115
Chr5:7454078 T TTA 2bp_insertion CDS_variant 1 B115
Chr5:7454178 G A EMS_canonical_SNV CDS_variant 3 C59,C74,D2
Chr5:7454199 C T EMS_canonical_SNV CDS_variant 2 B80,D2
Chr5:7454281 G A EMS_canonical_SNV CDS_variant 1 B105
Chr5:7454374 G A EMS_canonical_SNV CDS_variant 1 C12
Chr5:7454760 C T EMS_canonical_SNV CDS_variant 1 B21

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057908716.1
CGAAATTCTCTTTAATTAATAATGTTATACAGAATTTTCTAATCTGAAAACCAACCACTGGGAATGTATTTCCTCATTAATATGCATTGCCTATCAAAACCAGTAGGATTAAAGTGTCGGGACCGGATTCCATCCGCTAGTTTGAGTCAGCCGTCCGTACCTACAACATATATATATATATAATAGAGCCACACATCACAAGCCATACAATTCACTGCCCAACTCAAGATTTCAATTTTAGTGAGAAGGAAGACGAAATT...
XM_057908715.1
CGAAATTCTCTTTAATTAATAATGTTATACAGAATTTTCTAATCTGAAAACCAACCACTGGGAATGTATTTCCTCATTAATATGCATTGCCTATCAAAACCAGTAGGATTAAAGTGTCGGGACCGGATTCCATCCGCTAGTTTGAGTCAGCCGTCCGTACCTACAACATATATATATATATAATAGAGCCACACATCACAAGCCATACAATTCACTGCCCAACTCAAGATTTCAATTTTAGTGAGAAGGAAGACGAAATT...

CDS

2 records

下载 CDS FASTA
LOC130985645
ATGGCAGAAGAGTTCCTCCAAGGGGGAGTAAGCTGGTGGAATTCGCCGCGAAATCTCTTCAGTTGGTCGCCATGCTCGTTGGCGTCCAACGACGGCTGGCCGACCACAAGTGTACGCTCAAGCGATGAATCCGCCGCCTCCGACGGAAGCAGCTCCCTAGTAATACAAGATCACCAGCCGCCTCCCGACGCCGCCATGATGGGACTCGGTCTTTCACCCTCGGACGCCTGGAATCAAGATTTGCTCCGAGATAGCGGAAG...
LOC130985645
ATGGCAGAAGAGTTCCTCCAAGGGGGAGTAAGCTGGTGGAATTCGCCGCGAAATCTCTTCAGTTGGTCGCCATGCTCGTTGGCGTCCAACGACGGCTGGCCGACCACAAGTGTACGCTCAAGCGATGAATCCGCCGCCTCCGACGGAAGCAGCTCCCTAGTAATACAAGATCACCAGCCGCCTCCCGACGCCGCCATGATGGGACTCGGTCTTTCACCCTCGGACGCCTGGAATCAAGATTTGCTCCGAGATAGCGGAAG...

Protein

2 records

下载 Protein FASTA
XP_057764698.1
MAEEFLQGGVSWWNSPRNLFSWSPCSLASNDGWPTTSVRSSDESAASDGSSSLVIQDHQPPPDAAMMGLGLSPSDAWNQDLLRDSGRSEDNYSNLLLDSTTTQIKNFSGEDSSMKQANQCFGSAESYSYASSLLQTLFDTDSQPHPSLLDHQTALSYSSVAAADAHQINSNGFLPKPSPTANRLWNASPTFPPSDHFFPSSLTNQIHSIATKQHEQGSKDLAATVVKKANNEPAFKRPRIETPSPLPTFKVRKEKLGDRI...
XP_057764699.1
MAEEFLQGGVSWWNSPRNLFSWSPCSLASNDGWPTTSVRSSDESAASDGSSSLVIQDHQPPPDAAMMGLGLSPSDAWNQDLLRDSGRSEDNYSNLLLDSTTTQIKNFSGEDSSMKQANQCFGSAESYSYASSLLQTLFDTDSQPHPSLLDHQTALSYSSVAAADAHQINSNGFLPKPSPTANRLWNASPTFPPSDHFFPSSLTNQIHSIATKHEQGSKDLAATVVKKANNEPAFKRPRIETPSPLPTFKVRKEKLGDRIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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