Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000935`

染色体: Chr05 坐标: 7495422-7496832 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000935`
名称	SmilChr05G000935
描述	transcription factor DYT1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7495422 - 7496832 / `-`

ID 对照

NCBI Gene ID	`LOC130985651`
GeneID	`130985651`
locus_tag	`-`
NCBI Name	`LOC130985651`
原始查询	`LOC130985651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor DYT1-like
产物	transcription factor DYT1-like
Arabidopsis	`AT4G21330` (DYT1) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827883] identity=41.9; qcov=0.93; evalue=1.41e-35; confidence=medium
Rice	`Os11g0523700` (OsbHLH002) - identity=32.9; qcov=0.79; evalue=6.57e-16; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF22754 (bHLH-TF_ACT-like_plant)
InterPro	-
eggNOG	-
NR	GeneID:130985651

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764706.1`
2	Chromosome	染色体	0.00000	`XP_057764706.1`
3	Centromere	着丝粒	0.00000	`XP_057764706.1`
4	Chromatin	染色质	0.00000	`XP_057764706.1`
5	Telomere	端粒	0.00000	`XP_057764706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7496407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B86,C27,C28,C47
`Chr5:7496537`	`CA`	`C`	1bp_deletion	frameshift_variant	3	C41,C72,D5
`Chr5:7496537`	`CA`	`C`	1bp_deletion	CDS_variant	3	C41,C72,D5
`Chr5:7496600`	`G`	`GA`	1bp_insertion	frameshift_variant	140	A1,A10,A18,A2,A20,A23,A24,A3,A4,A9,B1,B100,B101,B102,B104,B108,B109,B110,B114,B115,B12,B121,B123,B125,B126,B127,B128,B129,B131,B133,B134,B135,B139,B140,B15,B19,B21,B22,B23,B25,B26,B28,B29,B33,B34,B35,B36,B37,B4,B41,B42,B49,B51,B52,B55,B59,B6,B60,B61,B62,B64,B66,B72,B73,B74,B75,B77,B78,B8,B80,B81,B83,B85,B86,B89,B9,B90,B91,B97,C1,C10,C11,C12,C14,C17,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C32,C34,C37,C39,C4,C41,C43,C44,C45,C47,C49,C5,C50,C52,C56,C57,C58,C59,C6,C63,C64,C66,C67,C68,C69,C71,C72,C73,C75,C77,C79,C8,C84,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764706.1

278 aa

139

278

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 109-154 aa PF22754 bHLH-TF_ACT-like_plant 198-275 aa

XP_057764707.1

200 aa

100

200

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 31-76 aa PF22754 bHLH-TF_ACT-like_plant 120-197 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764706.1`	Pfam	`PF00010`	HLH	Domain	109	154	4.9e-07	30.2	Helix-loop-helix DNA-binding domain
`XP_057764706.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	198	275	1e-07	32.7	Plant bHLH transcription factor, ACT-like domain
`XP_057764707.1`	Pfam	`PF00010`	HLH	Domain	31	76	3e-07	30.9	Helix-loop-helix DNA-binding domain
`XP_057764707.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	120	197	4.7e-08	33.7	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908724.1
GTTTGATATTACGGTTGATAAAGGGTCACAAATTCATTTTCCAAATGGTTTCAAACTGATTATAACAGATTTTCGCATTAAGTATTAAAACTAGGTAGCATACTTAAAAAGAGTGAAACGATGGGGAGCAGCATGGACGATAGGAAGCACACTGATCAAGACGACAACGACAACGACAACGGCGACGACGATTCAAAGTTCAAATCCAAGAACCTCAAAGCTGAGAGGAGAAGGCGGAAGAAACTCTCTGATAGACAACT...

XM_057908723.1
ATGAGCCTCTCAACGCCCAAAGACACTGACCATTTGTGTATGTTGACCATGGATGCTAACAAACTTCAACAAGAAGATTCCCATTGCCTCTCTTTTCTTTCCTCTAGTGTTAGGACACTTATAAATAGGAATTCCCTTCCATCATTTCAAACAAAAATTTACATTTGTTTTTGTGACATTCATGTCTGTTATCCAGTATTAAAACTAGGTAGCATACTTAAAAAGAGTGAAACGATGGGGAGCAGCATGGACGATAGGAA...

CDS

2 records

下载 CDS FASTA

LOC130985651
ATGAGCCTCTCAACGCCCAAAGACACTGACCATTTGTGTATGTTGACCATGGATGCTAACAAACTTCAACAAGAAGATTCCCATTGCCTCTCTTTTCTTTCCTCTAGTGTTAGGACACTTATAAATAGGAATTCCCTTCCATCATTTCAAACAAAAATTTACATTTGTTTTTGTGACATTCATGTCTGTTATCCAGTATTAAAACTAGGTAGCATACTTAAAAAGAGTGAAACGATGGGGAGCAGCATGGACGATAGGAA...

LOC130985651
ATGGGGAGCAGCATGGACGATAGGAAGCACACTGATCAAGACGACAACGACAACGACAACGGCGACGACGATTCAAAGTTCAAATCCAAGAACCTCAAAGCTGAGAGGAGAAGGCGGAAGAAACTCTCTGATAGACAACTAGAGCTACGCGCCTTAGTCCCTATCATTACAAATATGAATAAAGCCACCATAATCACTGATGCAATCACTTACATTGAAGAGCTAAAAATGTGTGTGGAAGAACTAGGCAACCAACTCCT...

Protein

2 records

下载 Protein FASTA

XP_057764706.1
MSLSTPKDTDHLCMLTMDANKLQQEDSHCLSFLSSSVRTLINRNSLPSFQTKIYICFCDIHVCYPVLKLGSILKKSETMGSSMDDRKHTDQDDNDNDNGDDDSKFKSKNLKAERRRRKKLSDRQLELRALVPIITNMNKATIITDAITYIEELKMCVEELGNQLLQMEATSIDEEKIKLKEMDDEQEIKKHGIKVEVEVEVNHICGTKLWIRIVFQKKKGALTKLMEAIGKLGIDLNDTTITTSRGAVLFTSFGEGIRGG...

XP_057764707.1
MGSSMDDRKHTDQDDNDNDNGDDDSKFKSKNLKAERRRRKKLSDRQLELRALVPIITNMNKATIITDAITYIEELKMCVEELGNQLLQMEATSIDEEKIKLKEMDDEQEIKKHGIKVEVEVEVNHICGTKLWIRIVFQKKKGALTKLMEAIGKLGIDLNDTTITTSRGAVLFTSFGEGIRGGLPEADQMKKYLLEIIRSI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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