Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000939`

染色体: Chr05 坐标: 7562288-7564893 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000939`
名称	SmilChr05G000939
描述	exo-alpha-bergamotene synthase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7562288 - 7564893 / `+`

ID 对照

NCBI Gene ID	`LOC130985655`
GeneID	`130985655`
locus_tag	`-`
NCBI Name	`LOC130985655`
原始查询	`LOC130985655`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exo-alpha-bergamotene synthase-like
产物	exo-alpha-bergamotene synthase-like
Arabidopsis	`AT4G16740` (TPS03) terpene synthase 03 [Source:NCBI gene (formerly Entrezgene);Acc:827377] identity=45.6; qcov=1.02; evalue=1.54e-161; confidence=high
Rice	`Os08g0168000` (OsTPS31) - identity=30.9; qcov=1.01; evalue=6.7e-77; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130985655

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057764710.1`
2	Cytosol	细胞质基质	0.60000	`XP_057764710.1`
3	Chloroplast	叶绿体	0.60000	`XP_057764710.1`
4	Nucleus	细胞核	0.00000	`XP_057764710.1`
5	Chromosome	染色体	0.00000	`XP_057764710.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7562988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:7563573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C41,C72,D5
`Chr5:7563860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:7564306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B23,B33,B78,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764710.1

542 aa

271

542

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-484 aa PF19086 Terpene_syn_C_2 289-485 aa

XP_057764712.1

542 aa

271

542

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-484 aa PF19086 Terpene_syn_C_2 289-485 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764710.1`	Pfam	`PF01397`	Terpene_synth	Repeat	14	190	3.9e-53	180.7	Terpene synthase, N-terminal domain
`XP_057764710.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	247	484	5.8e-87	291.7	Terpene synthase family, metal binding domain
`XP_057764710.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	289	485	8.1e-56	189.7	Terpene synthase family 2, C-terminal metal binding
`XP_057764712.1`	Pfam	`PF01397`	Terpene_synth	Repeat	14	190	3.9e-53	180.7	Terpene synthase, N-terminal domain
`XP_057764712.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	247	484	5.8e-87	291.7	Terpene synthase family, metal binding domain
`XP_057764712.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	289	485	8.1e-56	189.7	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908727.1
TAAAGAGTAGAAGCATTCAATCTTAGCCTCAAATCGGTAATCAGTCGTATATATATATTCAGGCGATTCTCATCTCTCATACTCACATTTCGAACAACTATGTAGCAATCTTTCAGTATTTGTGAAATACTGATCTCCACATCTAATCACAGCACAGCTTGTTAAGATCGAAATTGATCATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATTACATTCAGTCTCTCACAAGTTTATAC...

XM_057908729.1
ATCTTAGCCTCAAATCGGTAATCAGTCGTATATATATATTCAGGCGATTCTCATCTCTCATACTCACATTTCGAACAACTATGTAGCAATCTTTCAGTATTTGTGAAATACTGATCTCCACATCTAATCACAGCACAGATCGAAATTGATCATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATTACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTG...

CDS

2 records

下载 CDS FASTA

LOC130985655
ATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATTACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTGAGAAACTGAAAAATCTGGTGAAAATAATGATAGACGAAACCGAAGACGAGCTGGACCAACTTGAGCTTATCGACAGTCTGCAGAGGCTGGGTTTATGTAACCACTTTGAGGATCGAATAGCTAAGATGTTAGACAACATTTATGAGGCGGA...

Protein

2 records

下载 Protein FASTA

XP_057764710.1
MEEVRRSANLGASIWDDDYIQSLTSLYTGEKYVAEAEKLKNLVKIMIDETEDELDQLELIDSLQRLGLCNHFEDRIAKMLDNIYEAEKCRDDENMEKDLHITALRFRLLRQHGYHVPQEIFCSFMDDVGNFKASLCEDVRGVVSLYEASYLSVEGESLLDLAKDFSLNHLTRRIDKITEPHLREQVKHALEVPLHWRVQRLEARWYIKAYESRSSANLILVELAKLDFNMVQATHQQELKRMSRWYKETGLPEKLGFARH...

XP_057764712.1
MEEVRRSANLGASIWDDDYIQSLTSLYTGEKYVAEAEKLKNLVKIMIDETEDELDQLELIDSLQRLGLCNHFEDRIAKMLDNIYEAEKCRDDENMEKDLHITALRFRLLRQHGYHVPQEIFCSFMDDVGNFKASLCEDVRGVVSLYEASYLSVEGESLLDLAKDFSLNHLTRRIDKITEPHLREQVKHALEVPLHWRVQRLEARWYIKAYESRSSANLILVELAKLDFNMVQATHQQELKRMSRWYKETGLPEKLGFARH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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