Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000943`

染色体: Chr05 坐标: 7625635-7629290 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000943`
名称	SmilChr05G000943
描述	bifunctional riboflavin kinase/FMN phosphatase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7625635 - 7629290 / `+`

ID 对照

NCBI Gene ID	`LOC130985659`
GeneID	`130985659`
locus_tag	`-`
NCBI Name	`LOC130985659`
原始查询	`LOC130985659`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional riboflavin kinase/FMN phosphatase-like
产物	bifunctional riboflavin kinase/FMN phosphatase-like
Arabidopsis	`AT4G21470` (FMN/FHY) riboflavin kinase/FMN hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:828232] identity=77.8; qcov=0.978; evalue=4.43e-158; confidence=high
Rice	`Os10g0464400` (GLN) - identity=74.4; qcov=0.978; evalue=7.05e-153; confidence=high
GO	GO:0008531 (riboflavin kinase activity); GO:0009231 (riboflavin biosynthetic process); GO:0009398 (FMN biosynthetic process)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase); PF01687 (Flavokinase); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro	-
eggNOG	-
NR	GeneID:130985659

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057764716.1`
2	Cytoplasm	细胞质	0.80000	`XP_057764716.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057764716.1`
4	Nucleus	细胞核	0.00000	`XP_057764717.1`
5	Chromosome	染色体	0.00000	`XP_057764717.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7626260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,C54,D2,D3
`Chr5:7627873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B36
`Chr5:7628684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr5:7628697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,D7
`Chr5:7628749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:7628788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr5:7629098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr5:7629108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764716.1

381 aa

190

381

Hydrolase

HAD_2

Hydrolase_like

Flavokinase

PF00702 Hydrolase 10-185 aa PF13419 HAD_2 12-191 aa PF13242 Hydrolase_like 146-193 aa PF01687 Flavokinase 236-360 aa

XP_057764717.1

272 aa

136

272

HAD_2

Hydrolase

Hydrolase_like

Flavokinase

PF13419 HAD_2 1-82 aa PF00702 Hydrolase 2-76 aa PF13242 Hydrolase_like 37-84 aa PF01687 Flavokinase 126-251 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764716.1`	Pfam	`PF00702`	Hydrolase	Domain	10	185	1.7e-24	88.0	haloacid dehalogenase-like hydrolase
`XP_057764716.1`	Pfam	`PF13419`	HAD_2	Family	12	191	4.6e-26	92.6	Haloacid dehalogenase-like hydrolase
`XP_057764716.1`	Pfam	`PF13242`	Hydrolase_like	Domain	146	193	2.7e-05	24.7	HAD-hyrolase-like
`XP_057764716.1`	Pfam	`PF01687`	Flavokinase	Domain	236	360	7.2e-36	123.8	Riboflavin kinase
`XP_057764717.1`	Pfam	`PF13419`	HAD_2	Family	1	82	2.6e-13	51.1	Haloacid dehalogenase-like hydrolase
`XP_057764717.1`	Pfam	`PF00702`	Hydrolase	Domain	2	76	3.4e-15	57.7	haloacid dehalogenase-like hydrolase
`XP_057764717.1`	Pfam	`PF13242`	Hydrolase_like	Domain	37	84	1.9e-05	25.2	HAD-hyrolase-like
`XP_057764717.1`	Pfam	`PF01687`	Flavokinase	Domain	126	251	4.1e-36	124.6	Riboflavin kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908733.1
AAAGCAAAAAAGAAAAAAAAAGACCCAATAAGTCGAGCAGATTCTCTCTCGTCTCCATCGCTCTTGTCGCCGTGCCACTATATAGATAGATAGCATTCTGTTGAAGTCTTTTCTCTCACCGGTTTTTGGATTATATTTTTGTGCTGCCGCCGTTGAAGGCTTCATGGTTGAAGAATCTTAACTTTGCTCTGGTGTGCTATTCGTAATGACAAGTTCCTTGAGAAAGCTCGTGTCTTGCGTTATCCTTGATTTGGATGGAA...

XM_057908734.1
CAACAGGCTTCATGGTTGAAGAATCTTAACTTTGCTCTGGTGTGCTATTCGTAATGACAAGTTCCTTGAGAAAGCTCGTGTCTTGCGTTATCCTTGATTTGGATGGAACCCTTCTTAATACAGATGGTGCAGCATCAAAGCGCAACCTGGTGCAAACAGGTTAATTAGCCATTTGAGGAGTCATGGTGTGTTGATGGGCTTGGCTTCAAATTCTTCGAAGGAAAATATCAAAACTAAGATTTCTTATCATCAAGGTTGGA...

CDS

2 records

下载 CDS FASTA

LOC130985659
ATGACAAGTTCCTTGAGAAAGCTCGTGTCTTGCGTTATCCTTGATTTGGATGGAACCCTTCTTAATACAGATGCCATTGTGCATGATGTCTTGAAGGCTTACTTGGTTAAGTATGGAAAGCAATGGGACGGAAGAAAATCTCATAGAATCGTAGGAAAGACACCCTATGAAGCTGCTACTGCTATTGTTGAAGATTATGAACTTCCCATAACTACAAATGAACTTTTATCACAACTTTCTCCAATATTCTCGGAAAAATG...

LOC130985659
ATGGGCTTGGCTTCAAATTCTTCGAAGGAAAATATCAAAACTAAGATTTCTTATCATCAAGGTTGGAAAGAATCATTCTCTGTCATTATAGGTGGTGATGAAGTCACTTGTGCGAAGCCATCTCCTGAAATATATCTTGAAGTTGCTAAGAGGCTAAAGGTGGATAGTCCCAGTTGTCTCGTCGTTGAAGATTCAGTGCCGGGTGTTGCTGCTGGTAAGGCAGCTGGAATGGAAGTGGTTGCTGTTCCATCGCTTCCTAA...

Protein

2 records

下载 Protein FASTA

XP_057764716.1
MTSSLRKLVSCVILDLDGTLLNTDAIVHDVLKAYLVKYGKQWDGRKSHRIVGKTPYEAATAIVEDYELPITTNELLSQLSPIFSEKWCSIKAQPGANRLISHLRSHGVLMGLASNSSKENIKTKISYHQGWKESFSVIIGGDEVTCAKPSPEIYLEVAKRLKVDSPSCLVVEDSVPGVAAGKAAGMEVVAVPSLPKQSHIFTSADEVINSLLDLRPEKWGLPAFEDWVEATLPIEPWYIGGPVIKGYGRGSKVLGIPTAN...

XP_057764717.1
MGLASNSSKENIKTKISYHQGWKESFSVIIGGDEVTCAKPSPEIYLEVAKRLKVDSPSCLVVEDSVPGVAAGKAAGMEVVAVPSLPKQSHIFTSADEVINSLLDLRPEKWGLPAFEDWVEATLPIEPWYIGGPVIKGYGRGSKVLGIPTANLSTEGYSDLLSEHPSGVYFGWAGLATRGVYKMVMSIGWNPYFNNTEKTIEPWLLHDFNQDFYGEDLRLAIVGYIRPEANFSSLESLVAKIHEDGEIAAKALQLPQYSKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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