当前解析结果
SmilChr01G000192| 统一新 Gene ID | SmilChr01G000192 |
|---|---|
| 名称 | SmilChr01G000192 |
| 描述 | rac-like GTP-binding protein ARAC7 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 3285237 - 3286675 / - |
| NCBI Gene ID | LOC130985664 |
|---|---|
| GeneID | 130985664 |
| locus_tag | - |
| NCBI Name | LOC130985664 |
| 原始查询 | LOC130985664 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rac-like GTP-binding protein ARAC7 |
| 产物 | rac-like GTP-binding protein ARAC7 |
| Arabidopsis | AT4G28950 (ROP9)RHO-related protein from plants 9 [Source:NCBI gene (formerly Entrezgene);Acc:829016] identity=90.2; qcov=0.946; evalue=1.69e-78; confidence=high |
| Rice | Os05g0513800 (OsRAC2)- identity=91.1; qcov=0.946; evalue=3.63e-78; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00071 (Ras); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985664 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057765088.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057765088.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057765088.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057765088.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:3285666 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | D11 |
Chr1:3285666 |
T |
TA |
1bp_insertion | CDS_variant | 1 | D11 |
Chr1:3285691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B135,B23,B71 |
Chr1:3285692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B137 |
Chr1:3285695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A13,B117,C27,C83 |
Chr1:3285707 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A15,A8,B48,B70,C37,C81,D5 |
Chr1:3285860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B24 |
Chr1:3285974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr1:3285985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr1:3286011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:3286443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C74 |
Chr1:3286455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765088.1PF00071
Ras 7-126 aa
PF08477
Roc 15-85 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765088.1 |
Pfam | PF00071 |
Ras | Domain | 7 | 126 | 2.4e-29 | 102.7 | Ras family |
XP_057765088.1 |
Pfam | PF08477 |
Roc | Domain | 15 | 85 | 1.5e-14 | 54.9 | Ras of Complex, Roc, domain of DAPkinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。