Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000984`

染色体: Chr05 坐标: 7970236-7973048 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000984`
名称	SmilChr05G000984
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7970236 - 7973048 / `+`

ID 对照

NCBI Gene ID	`LOC130985701`
GeneID	`130985701`
locus_tag	`-`
NCBI Name	`LOC130985701`
原始查询	`LOC130985701`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13
产物	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13
Arabidopsis	`AT1G11330` (AT1G11330) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=51.1; qcov=1; evalue=3.18e-162; confidence=high
Rice	`Os01g0783800` - identity=48.9; qcov=0.996; evalue=1.09e-141; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403)
InterPro	-
eggNOG	-
NR	GeneID:130985701

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764771.1`
2	Nucleus	细胞核	0.00000	`XP_057764771.1`
3	Chromosome	染色体	0.00000	`XP_057764771.1`
4	Centromere	着丝粒	0.00000	`XP_057764771.1`
5	Chromatin	染色质	0.00000	`XP_057764771.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7970467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr5:7970641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B74,B97
`Chr5:7970662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,C18,D3
`Chr5:7970698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr5:7970733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:7970737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C9
`Chr5:7970888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr5:7970996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B61,C49,C60,C85
`Chr5:7971821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr5:7972564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr5:7972735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C22,C4
`Chr5:7972784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B75,B84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764771.1

564 aa

282

564

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF00954 S_locus_glycop 25-59 aa PF08276 PAN_2 81-142 aa PF00069 Pkinase 250-446 aa PF07714 PK_Tyr_Ser-Thr 251-513 aa PF11883 DUF3403 518-564 aa

XP_057764772.1

470 aa

235

470

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF08276 PAN_2 14-48 aa PF00069 Pkinase 156-352 aa PF07714 PK_Tyr_Ser-Thr 157-419 aa PF11883 DUF3403 424-470 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764771.1`	Pfam	`PF00954`	S_locus_glycop	Domain	25	59	2.5e-06	28.7	S-locus glycoprotein domain
`XP_057764771.1`	Pfam	`PF08276`	PAN_2	Domain	81	142	5.1e-10	40.0	PAN-like domain
`XP_057764771.1`	Pfam	`PF00069`	Pkinase	Domain	250	446	4.2e-46	158.2	Protein kinase domain
`XP_057764771.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	251	513	2.2e-49	168.8	Protein tyrosine and serine/threonine kinase
`XP_057764771.1`	Pfam	`PF11883`	DUF3403	Family	518	564	1.4e-07	32.2	Domain of unknown function (DUF3403)
`XP_057764772.1`	Pfam	`PF08276`	PAN_2	Domain	14	48	8.8e-08	32.9	PAN-like domain
`XP_057764772.1`	Pfam	`PF00069`	Pkinase	Domain	156	352	2.8e-46	158.8	Protein kinase domain
`XP_057764772.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	157	419	1.4e-49	169.4	Protein tyrosine and serine/threonine kinase
`XP_057764772.1`	Pfam	`PF11883`	DUF3403	Family	424	470	1.1e-07	32.5	Domain of unknown function (DUF3403)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908789.1
ACATGACCGAGTTGGGAGACCAGCATTACCATTACCATTACCACAAAAAAATAAAATGTTAAGTGGGGTCAACGGCTCGCATTTGAAATTTGTTCAGTTGAGTCCACATCTCAAAATTTGTTAACAGCACGCGGAATTCAGTTAGTGAAAGGGCACAGGTGAACAACACATCCGGCGACCCTTGCCAGACTCCCGGCAGGTGTGGCGAATTCGGGGTGTGCTACCAAAGGGACTCCCCGATTTGTTCTTGTTTGCCGGGA...

XM_057908788.1
AGTTGGGAGACCAGCATTACCATTACCATTACCACAAAAAAATAAAATGTTAAGTGGGGTCAACGGCTCGCATTTGAAATTTGTTCAGTTGAGTCCACATCTCAAAATTTGTTAACAGCACGCGGAATTCAGTTAGTGAAAGGCAAGTAGGAATTCGACGATGATGATGCATCTCAACTTTGCTCTTGTGATTTTGTTATGCCCCTGGTTTTGCAGGGCACAGGTGAACAACACATCCGGCGACCCTTGCCAGACTCCCG...

CDS

2 records

下载 CDS FASTA

LOC130985701
ATGATGATGCATCTCAACTTTGCTCTTGTGATTTTGTTATGCCCCTGGTTTTGCAGGGCACAGGTGAACAACACATCCGGCGACCCTTGCCAGACTCCCGGCAGGTGTGGCGAATTCGGGGTGTGCTACCAAAGGGACTCCCCGATTTGTTCTTGTTTGCCGGGATTTGAGCCGCGGATCAATCAGGAATGGGCTTCCGGAAACTGGAGCAGCGGCTGTGTGAGGAGCTCCCCTTTGAACTGTAATAACGCCACCACCAC...

LOC130985701
ATGATCATAGTCACGGTTAATGAGGATTGGCGCCCCGGCTCCGAAGCTCAGTGCAAAACCCGATGCCGCACCAACTGCTCCTGCCTTGCCTACGGCTTCGACGGCGGTCGTGGCTGTAGATTGTGGGCTGGAACCTTAAACAACATTCAGAAATTCCCCAGCAACTCCGGCTCTAATCTTTATATCCGCCTCGCTAATTCCGAAATAGATCAAAAGAAAGACTCTAAGAAGATTATCATCATTGTAGTGGTTGTGGTTTT...

Protein

2 records

下载 Protein FASTA

XP_057764771.1
MMMHLNFALVILLCPWFCRAQVNNTSGDPCQTPGRCGEFGVCYQRDSPICSCLPGFEPRINQEWASGNWSSGCVRSSPLNCNNATTTDGFFKVQMIIVTVNEDWRPGSEAQCKTRCRTNCSCLAYGFDGGRGCRLWAGTLNNIQKFPSNSGSNLYIRLANSEIDQKKDSKKIIIIVVVVVFFIASICACVSWKWIAARRGKKKSSQLGKQDPSFLADSSLQDVLSQVNLEELPLFKFETVANATNNFFEDSKLGKGGFGS...

XP_057764772.1
MIIVTVNEDWRPGSEAQCKTRCRTNCSCLAYGFDGGRGCRLWAGTLNNIQKFPSNSGSNLYIRLANSEIDQKKDSKKIIIIVVVVVFFIASICACVSWKWIAARRGKKKSSQLGKQDPSFLADSSLQDVLSQVNLEELPLFKFETVANATNNFFEDSKLGKGGFGSVYKGELVDGREIAVKRLSQASTQGMQEFMNELVLISKLQHRNLVRLIGCCIENKEKMLIYEYMPNKSLDFYLFDHSQQILDWRKRFNVIQGICR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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