当前解析结果
SmilChr05G001020| 统一新 Gene ID | SmilChr05G001020 |
|---|---|
| 名称 | SmilChr05G001020 |
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8359900 - 8363307 / - |
| NCBI Gene ID | LOC130985730 |
|---|---|
| GeneID | 130985730 |
| locus_tag | - |
| NCBI Name | LOC130985730 |
| 原始查询 | LOC130985730 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 产物 | cysteine-rich receptor-like protein kinase 44 |
| Arabidopsis | AT4G21410 (CRK29)cysteine-rich RLK (RECEPTOR-like protein kinase) 29 [Source:NCBI gene (formerly Entrezgene);Acc:827893] identity=54.8; qcov=0.94; evalue=3.99e-179; confidence=high |
| Rice | Os05g0493100- identity=50.9; qcov=0.93; evalue=2.58e-162; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985730 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764810.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764810.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764810.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764810.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8360328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B125,B77 |
Chr5:8360539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr5:8361099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B46 |
Chr5:8361519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:8361686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr5:8361725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B136,B41,B94,D10 |
Chr5:8361736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C29 |
Chr5:8361777 |
A |
AAT |
2bp_insertion | frameshift_variant | 95 | A10,A14,A16,A19,A20,A21,A22,A4,A6,A9,B100,B104,B111,B112,B113,B122,B123,B124,B125,B127,B129,B13,B130,B135,B136,B14,B16,B2,B20,B25,B27,B3,B33,B38,B39,B46,B48,B49,B50,B55,B56,B57,B60,B66,B72,B74,B75,B78,B8,B80,B82,B83,B84,B85,B93,B96,B97,B99,C11,C12,C13,C16,C22,C23,C25,C27,C30,C33,C34,C35,C37,C39,C42,C46,C47,C48,C49,C6,C62,C64,C66,C69,C70,C71,C77,C78,C8,C80,C83,C84,C9,D11,D2,D6,D8 |
Chr5:8361782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:8361802 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B130,B25,B97 |
Chr5:8361802 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B130,B25,B97 |
Chr5:8362232 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764810.1PF01657
Stress-antifung 27-120 aa
PF01657
Stress-antifung 140-234 aa
PF00069
Pkinase 358-557 aa
PF07714
PK_Tyr_Ser-Thr 360-626 aa
XP_057764811.1PF01657
Stress-antifung 27-120 aa
PF01657
Stress-antifung 140-234 aa
PF00069
Pkinase 332-531 aa
PF07714
PK_Tyr_Ser-Thr 334-600 aa
XP_057764812.1PF01657
Stress-antifung 7-101 aa
PF00069
Pkinase 225-424 aa
PF07714
PK_Tyr_Ser-Thr 227-494 aa
XP_057764813.1PF01657
Stress-antifung 7-101 aa
PF00069
Pkinase 199-398 aa
PF07714
PK_Tyr_Ser-Thr 201-468 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764810.1 |
Pfam | PF01657 |
Stress-antifung | Family | 27 | 120 | 1.7e-37 | 128.7 | Salt stress response/antifungal |
XP_057764810.1 |
Pfam | PF01657 |
Stress-antifung | Family | 140 | 234 | 1.7e-37 | 128.7 | Salt stress response/antifungal |
XP_057764810.1 |
Pfam | PF00069 |
Pkinase | Domain | 358 | 557 | 6.2e-45 | 154.4 | Protein kinase domain |
XP_057764810.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 360 | 626 | 1.6e-47 | 162.7 | Protein tyrosine and serine/threonine kinase |
XP_057764811.1 |
Pfam | PF01657 |
Stress-antifung | Family | 27 | 120 | 1.6e-37 | 128.8 | Salt stress response/antifungal |
XP_057764811.1 |
Pfam | PF01657 |
Stress-antifung | Family | 140 | 234 | 1.6e-37 | 128.8 | Salt stress response/antifungal |
XP_057764811.1 |
Pfam | PF00069 |
Pkinase | Domain | 332 | 531 | 5.5e-45 | 154.5 | Protein kinase domain |
XP_057764811.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 334 | 600 | 1.5e-47 | 162.8 | Protein tyrosine and serine/threonine kinase |
XP_057764812.1 |
Pfam | PF01657 |
Stress-antifung | Family | 7 | 101 | 2.6e-13 | 51.2 | Salt stress response/antifungal |
XP_057764812.1 |
Pfam | PF00069 |
Pkinase | Domain | 225 | 424 | 4.4e-45 | 154.8 | Protein kinase domain |
XP_057764812.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 227 | 494 | 1.2e-47 | 163.1 | Protein tyrosine and serine/threonine kinase |
XP_057764813.1 |
Pfam | PF01657 |
Stress-antifung | Family | 7 | 101 | 2.6e-13 | 51.2 | Salt stress response/antifungal |
XP_057764813.1 |
Pfam | PF00069 |
Pkinase | Domain | 199 | 398 | 3.8e-45 | 155.1 | Protein kinase domain |
XP_057764813.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 201 | 468 | 1.1e-47 | 163.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。