当前解析结果
SmilChr05G001017| 统一新 Gene ID | SmilChr05G001017 |
|---|---|
| 名称 | SmilChr05G001017 |
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8323661 - 8328986 / - |
| NCBI Gene ID | LOC130985731 |
|---|---|
| GeneID | 130985731 |
| locus_tag | - |
| NCBI Name | LOC130985731 |
| 原始查询 | LOC130985731 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 产物 | cysteine-rich receptor-like protein kinase 44 |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=47.8; qcov=0.987; evalue=0; confidence=high |
| Rice | Os07g0537500- identity=46.5; qcov=0.916; evalue=9.22e-175; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985731 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764814.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764814.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764814.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764814.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8323843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B125,B77 |
Chr5:8323852 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B41 |
Chr5:8323852 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B41 |
Chr5:8323867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:8323907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B91,C58 |
Chr5:8323913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B41 |
Chr5:8324014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B87,B88 |
Chr5:8324018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B54,C26,C44 |
Chr5:8324088 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A15,B19,B21,B27,B42,B43,D8 |
Chr5:8324165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B40,C51,C80 |
Chr5:8324258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B48,B68,C15,C2 |
Chr5:8324281 |
C |
CA |
1bp_insertion | frameshift_variant | 90 | A1,A10,A14,A15,A16,A18,A19,A21,A22,A25,A3,B10,B100,B102,B105,B11,B110,B111,B113,B117,B120,B124,B125,B127,B129,B135,B139,B15,B16,B19,B21,B27,B3,B30,B37,B38,B39,B4,B42,B43,B45,B46,B49,B50,B52,B54,B6,B60,B62,B69,B70,B75,B76,B77,B80,B83,B84,B95,C16,C19,C21,C25,C27,C28,C29,C30,C31,C33,C34,C36,C39,C40,C41,C46,C47,C50,C54,C55,C59,C63,C7,C71,C72,C74,C76,C77,C79,C82,D5,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764814.1PF01657
Stress-antifung 32-125 aa
PF01657
Stress-antifung 144-238 aa
PF00069
Pkinase 346-553 aa
PF07714
PK_Tyr_Ser-Thr 348-557 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764814.1 |
Pfam | PF01657 |
Stress-antifung | Family | 32 | 125 | 1.7e-35 | 122.4 | Salt stress response/antifungal |
XP_057764814.1 |
Pfam | PF01657 |
Stress-antifung | Family | 144 | 238 | 1.7e-35 | 122.4 | Salt stress response/antifungal |
XP_057764814.1 |
Pfam | PF00069 |
Pkinase | Domain | 346 | 553 | 2.9e-47 | 162.0 | Protein kinase domain |
XP_057764814.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 348 | 557 | 7e-47 | 160.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。