当前解析结果
SmilChr05G001021| 统一新 Gene ID | SmilChr05G001021 |
|---|---|
| 名称 | SmilChr05G001021 |
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8371112 - 8373995 / - |
| NCBI Gene ID | LOC130985732 |
|---|---|
| GeneID | 130985732 |
| locus_tag | - |
| NCBI Name | LOC130985732 |
| 原始查询 | LOC130985732 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 产物 | cysteine-rich receptor-like protein kinase 44 |
| Arabidopsis | AT4G21410 (CRK29)cysteine-rich RLK (RECEPTOR-like protein kinase) 29 [Source:NCBI gene (formerly Entrezgene);Acc:827893] identity=49.7; qcov=1.04; evalue=0; confidence=high |
| Rice | Os05g0493100- identity=47.2; qcov=0.858; evalue=4.69e-176; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764815.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764815.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764815.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764815.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764815.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8371280 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B114,B129 |
Chr5:8371280 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B114,B129 |
Chr5:8371307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:8371332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,B75 |
Chr5:8371536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:8371939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B60,C9 |
Chr5:8372024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,B98 |
Chr5:8372426 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B29 |
Chr5:8372426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr5:8373014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:8373288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B114,B129,B63,B95 |
Chr5:8373756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A24,C18,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764815.1PF01657
Stress-antifung 31-124 aa
PF01657
Stress-antifung 143-237 aa
PF00069
Pkinase 341-547 aa
PF07714
PK_Tyr_Ser-Thr 343-609 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764815.1 |
Pfam | PF01657 |
Stress-antifung | Family | 31 | 124 | 1.8e-36 | 125.5 | Salt stress response/antifungal |
XP_057764815.1 |
Pfam | PF01657 |
Stress-antifung | Family | 143 | 237 | 1.8e-36 | 125.5 | Salt stress response/antifungal |
XP_057764815.1 |
Pfam | PF00069 |
Pkinase | Domain | 341 | 547 | 1.4e-43 | 150.0 | Protein kinase domain |
XP_057764815.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 343 | 609 | 2.6e-46 | 158.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。