Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001025

染色体: Chr05 坐标: 8408610-8411944 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001025
名称SmilChr05G001025
描述uncharacterized SmilChr05G001025
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向8408610 - 8411944 / +

ID 对照

NCBI Gene IDLOC130985736
GeneID130985736
locus_tag-
NCBI NameLOC130985736
原始查询LOC130985736

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827870]; symbol=AT4G21215; hit=AT4G21215; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827870]; symbol=AT4G21215; hit=AT4G21215; species=arabidopsis; confidence=medium
ArabidopsisAT4G21215 (AT4G21215)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827870]
identity=40.5; qcov=0.856; evalue=8.88e-25; confidence=medium
RiceOs07g0530700 (P0681F05.121-1)
-
identity=34; qcov=0.728; evalue=5.06e-13; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985736

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057764819.1
2 Nucleus 细胞核 0.00000 XP_057764819.1
3 Chromosome 染色体 0.00000 XP_057764819.1
4 Centromere 着丝粒 0.00000 XP_057764819.1
5 Chromatin 染色质 0.00000 XP_057764819.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:8409374 C T EMS_canonical_SNV CDS_variant 1 B132
Chr5:8409538 G A EMS_canonical_SNV CDS_variant 1 B24
Chr5:8409619 G A EMS_canonical_SNV CDS_variant 2 B89,C76
Chr5:8409644 C T EMS_canonical_SNV CDS_variant 1 B122
Chr5:8411284 C T EMS_canonical_SNV CDS_variant 1 C46

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057908838.1
CGCGCGCGTGTATGAGTATTTATTATACTAAAATGTCTTATTTTCTTTTTTAGGTTGTTCCATTTCAAATGTTTTGTTTTCTTTTATGAAAAAAATTATCATAAAAAAATAGAATTTTTGGAACGCACATCACTTTTTCAACTCTACGCCACACTACTTAATAATAATTAATATTTTTCTAAATAACGTGCCGAAAAGAAACAAGACATTTGATTTGGGACGAAGGCCGCAGTATATAAAAACATATATGTATAGTCACT...
XM_057908840.1
TAAACTGCCCACGCCTTACTCCCCCCAAAAAAAGAACAAAAAAAAAAAGCATGAATTCACTCTGAAATCTCAACCTTCTCTTCTCTTAATCATCCCCCAAAATTACCCATTCTTCTCCAATCATCTCAGCATTATTACATATGCTCTCGCAAATAATGAAATAAGAAAAACTGCTACATTCTTGAACACGAATCAACAAAAGCTGCTCAGACTAAGTTGACTAAAGAGGCATCTCTGTTTTCATGATGCGTCAGAATTTA...

CDS

6 records

下载 CDS FASTA
LOC130985736
ATGACTGAAATTCCAAAGCTGGAGGATATGGGTTCTGATCATCTTGTTACAAACTGCCTCGCCGGAGAATTCGGAGAGAATCAGAAAATCTCCGTCGTTGATCACGTGAATGCCCTGCACCACTCGTGCACTAAATCTGATAGCTTTGTGGTCGATATGGAGCGGTTTTCTCATCTCATAGAAAAGGATACCACTTCTGCAAATTCAAGAATCACTTTGCAGAGAAACCTTTCAAGGAAAGGATCGATGAGAACCGCAGA...
LOC130985736
ATGACTGAAATTCCAAAGCTGGAGGATATGGGTTCTGATCATCTTGTTACAAACTGCCTCGCCGGAGAATTCGGAGAGAATCAGAAAATCTCCGTCGTTGATCACGTGAATGCCCTGCACCACTCGTGCACTAAATCTGATAGCTTTGTGGTCGATATGGAGCGGTTTTCTCATCTCATAGAAAAGGATACCACTTCTGCAAATTCAAGAATCACTTTGCAGAGAAACCTTTCAAGGAAAGGATCGATGAGAACCGCAGA...

Protein

6 records

下载 Protein FASTA
XP_057764819.1
MTEIPKLEDMGSDHLVTNCLAGEFGENQKISVVDHVNALHHSCTKSDSFVVDMERFSHLIEKDTTSANSRITLQRNLSRKGSMRTAERKGSSNERDVSMLATSPRADFTPEKQAVVAAGPHDHSIPPQVHHQITITNGSITSTAVADAKRFTFRRSSPTWTIDPRRILFFFATLSCIGTILLIYFTLSMGKFNGDGDSDTNALN
XP_057764820.1
MTEIPKLEDMGSDHLVTNCLAGEFGENQKISVVDHVNALHHSCTKSDSFVVDMERFSHLIEKDTTSANSRITLQRNLSRKGSMRTAERKGSSNERDVSMLATSPRADFTPEKQAVVAAGPHDHSIPPQVHHQITITNGSITSTAVADAKRFTFRRSSPTWTIDPRRILFFFATLSCIGTILLIYFTLSMGKFNGDGDSDTNALN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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