Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001028`

染色体: Chr05 坐标: 8430870-8433189 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001028`
名称	SmilChr05G001028
描述	gibberellin 2-beta-dioxygenase 8-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	8430870 - 8433189 / `-`

ID 对照

NCBI Gene ID	`LOC130985740`
GeneID	`130985740`
locus_tag	`-`
NCBI Name	`LOC130985740`
原始查询	`LOC130985740`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	gibberellin 2-beta-dioxygenase 8-like
产物	gibberellin 2-beta-dioxygenase 8-like
Arabidopsis	`AT4G21200` (GA2OX8) gibberellin 2-oxidase 8 [Source:NCBI gene (formerly Entrezgene);Acc:827868] identity=59.9; qcov=0.87; evalue=1.84e-114; confidence=high
Rice	`Os04g0522500` (OsGA2ox6) - identity=50.5; qcov=0.907; evalue=3.72e-89; confidence=high
GO	GO:0052635 (GO:0052635)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:130985740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764828.1`
2	Cytosol	细胞质基质	1.00000	`XP_057764828.1`
3	Nucleus	细胞核	0.20000	`XP_057764828.1`
4	Chromosome	染色体	0.00000	`XP_057764828.1`
5	Centromere	着丝粒	0.00000	`XP_057764828.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:8431388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:8431732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr5:8431759`	`G`	`GAA`	2bp_insertion	frameshift_variant	50	A11,A18,B10,B100,B102,B104,B111,B135,B15,B18,B23,B26,B3,B30,B4,B41,B42,B43,B59,B65,B68,B75,B78,B79,B83,B89,B93,B95,C10,C22,C28,C3,C30,C31,C36,C4,C48,C50,C52,C59,C60,C7,C71,C72,C77,C8,C84,D10,D11,D9
`Chr5:8431764`	`TCC`	`T`	2bp_deletion	frameshift_variant	50	A11,A18,B10,B100,B102,B104,B111,B135,B15,B18,B23,B26,B3,B30,B4,B41,B42,B43,B59,B65,B68,B75,B78,B79,B83,B89,B93,B95,C10,C22,C28,C3,C30,C31,C36,C4,C48,C50,C52,C59,C60,C7,C71,C72,C77,C8,C84,D10,D11,D9
`Chr5:8432092`	`G`	`GGC`	2bp_insertion	frameshift_variant	2	B24,B93
`Chr5:8432092`	`G`	`GGC`	2bp_insertion	CDS_variant	2	B24,B93
`Chr5:8432419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,D7
`Chr5:8432431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,A24,C18,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764828.1

374 aa

187

374

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 76-176 aa PF03171 2OG-FeII_Oxy 229-325 aa

XP_057764829.1

301 aa

150

301

2OG-FeII_Oxy

PF03171 2OG-FeII_Oxy 156-252 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764828.1`	Pfam	`PF14226`	DIOX_N	Family	76	176	9.4e-17	62.5	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057764828.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	229	325	2e-34	118.7	2OG-Fe(II) oxygenase superfamily
`XP_057764829.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	156	252	1.5e-34	119.1	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908845.1
ATGGCAACTTGATATATGTATAGTCGTTGAAAATGACATGATTCTCTTGATAAGGATGAGCTAGAGTTCATCAATTAGTAGTTGTCAAAATTGACTGTTTCCATGTTAACTTTCTGATGATATTTGGTGCCCTAGAAAATGCAGAACCAAATTCTAGTGCAAGAGCCCCAAACAAAATCTCCCAAGACTACTACTTCGGCGACGATGTTGGTGCCTGTTTGCAACTCAGAGCGCTGCGCCAACCAACCGGTGAGAATGAG...

XM_057908846.1
TGTTAACTTTCTGATGATATTTGGTGCCCTAGAAAATGCAGAACCAAATTCTAGTGCAAGAGCCCCAAACAAAATCTCCCAAGACTACTACTTCGGCGACGATGTTGGTGCCTGTTTGCAACTCAGAGCGCTGCGCCAACCAAGTTATTAACCACGGAGTCCCCGTGGACGTGGTCGAGAAAATGAGAAGCGAGCAAATGAAGCTGTTGAGGAAGCCATTCCAAGAGAAGAAAGCCTTGAAAGATTTGAACTTGTCTGCT...

CDS

2 records

下载 CDS FASTA

LOC130985740
ATGCAGAACCAAATTCTAGTGCAAGAGCCCCAAACAAAATCTCCCAAGACTACTACTTCGGCGACGATGTTGGTGCCTGTTTGCAACTCAGAGCGCTGCGCCAACCAAGTTATTAACCACGGAGTCCCCGTGGACGTGGTCGAGAAAATGAGAAGCGAGCAAATGAAGCTGTTGAGGAAGCCATTCCAAGAGAAGAAAGCCTTGAAAGATTTGAACTTGTCTGCTGGAAGTTATCGATGGGGGACGCCTTCACCTACTTG...

LOC130985740
ATGCAGAACCAAATTCTAGTGCAAGAGCCCCAAACAAAATCTCCCAAGACTACTACTTCGGCGACGATGTTGGTGCCTGTTTGCAACTCAGAGCGCTGCGCCAACCAACCGGTGAGAATGAGCGAATCATCAGCTGATCCACCTTTCAAGATAGCTTACAAGAATCTGCTGGAGAAGGTGGGCGACACAGTGCAAAACAGTATGTTGGTTGTGGAGGAGTGCGAGCTGCCCTTAATCGATATGAAGCAGTTAGAGCTGGG...

Protein

2 records

下载 Protein FASTA

XP_057764828.1
MQNQILVQEPQTKSPKTTTSATMLVPVCNSERCANQPVRMSESSADPPFKIAYKNLLEKVGDTVQNSMLVVEECELPLIDMKQLELGEAERKACKKLIAQASQQWGFFQVINHGVPVDVVEKMRSEQMKLLRKPFQEKKALKDLNLSAGSYRWGTPSPTCLEQLSWSEAFHVQLTDILDSLAQNSLRWSMEQFALAVCEVAKELAEILAEEMGGETGIFKERCLPKSCYLRLNRYPACPTYSHIMGLMPHTDTSFLTLLH...

XP_057764829.1
MQNQILVQEPQTKSPKTTTSATMLVPVCNSERCANQVINHGVPVDVVEKMRSEQMKLLRKPFQEKKALKDLNLSAGSYRWGTPSPTCLEQLSWSEAFHVQLTDILDSLAQNSLRWSMEQFALAVCEVAKELAEILAEEMGGETGIFKERCLPKSCYLRLNRYPACPTYSHIMGLMPHTDTSFLTLLHQDNVGGLQLLKDGKWIAVKPNPHALIINIGDLFQAWSNNLYKSVEHRVVANPVKERFSAAYFLCPPRDTVIQS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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