当前解析结果
SmilChr05G001048| 统一新 Gene ID | SmilChr05G001048 |
|---|---|
| 名称 | SmilChr05G001048 |
| 描述 | homeobox-leucine zipper protein MERISTEM L1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8643111 - 8648334 / + |
| NCBI Gene ID | LOC130985743 |
|---|---|
| GeneID | 130985743 |
| locus_tag | - |
| NCBI Name | LOC130985743 |
| 原始查询 | LOC130985743 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein MERISTEM L1-like |
| 产物 | homeobox-leucine zipper protein MERISTEM L1-like |
| Arabidopsis | AT4G21750 (ATML1)Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828263] identity=77.9; qcov=1.05; evalue=0; confidence=high |
| Rice | Os08g0187500 (Roc1(t))- identity=78.5; qcov=0.978; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985743 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764832.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057764832.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057764832.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057764832.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057764832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8644944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr5:8644969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B125,B128,B77,C13 |
Chr5:8645545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr5:8645862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B125,B128,B14,C13 |
Chr5:8646068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr5:8646265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr5:8646517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D6,D8 |
Chr5:8646525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:8646550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:8646805 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C31 |
Chr5:8646805 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C31 |
Chr5:8646849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,C20,C5,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764832.1PF00046
Homeodomain 58-113 aa
PF01852
START 248-467 aa
PF25797
PDF2_C 486-723 aa
XP_057764833.1PF00046
Homeodomain 58-113 aa
PF01852
START 248-467 aa
PF25797
PDF2_C 486-723 aa
XP_057764834.1PF00046
Homeodomain 58-113 aa
PF01852
START 248-467 aa
PF25797
PDF2_C 486-723 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764832.1 |
Pfam | PF00046 |
Homeodomain | Domain | 58 | 113 | 2.9e-18 | 66.1 | Homeodomain |
XP_057764832.1 |
Pfam | PF01852 |
START | Domain | 248 | 467 | 3e-52 | 177.7 | START domain |
XP_057764832.1 |
Pfam | PF25797 |
PDF2_C | Domain | 486 | 723 | 1.9e-101 | 338.9 | PDF2-like, C-terminal domain |
XP_057764833.1 |
Pfam | PF00046 |
Homeodomain | Domain | 58 | 113 | 2.9e-18 | 66.1 | Homeodomain |
XP_057764833.1 |
Pfam | PF01852 |
START | Domain | 248 | 467 | 3e-52 | 177.7 | START domain |
XP_057764833.1 |
Pfam | PF25797 |
PDF2_C | Domain | 486 | 723 | 1.9e-101 | 338.9 | PDF2-like, C-terminal domain |
XP_057764834.1 |
Pfam | PF00046 |
Homeodomain | Domain | 58 | 113 | 2.9e-18 | 66.1 | Homeodomain |
XP_057764834.1 |
Pfam | PF01852 |
START | Domain | 248 | 467 | 3e-52 | 177.7 | START domain |
XP_057764834.1 |
Pfam | PF25797 |
PDF2_C | Domain | 486 | 723 | 1.9e-101 | 338.9 | PDF2-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。