Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001097`

染色体: Chr05 坐标: 9140707-9143486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001097`
名称	SmilChr05G001097
描述	glucan endo-1,3-beta-glucosidase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9140707 - 9143486 / `+`

ID 对照

NCBI Gene ID	`LOC130985804`
GeneID	`130985804`
locus_tag	`-`
NCBI Name	`LOC130985804`
原始查询	`LOC130985804`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucan endo-1,3-beta-glucosidase 1
产物	glucan endo-1%2C3-beta-glucosidase 1
Arabidopsis	`AT1G11820` (AT1G11820) O-Glycosyl hydrolases family 17 protein [Source:NCBI gene (formerly Entrezgene);Acc:837730] identity=82; qcov=0.925; evalue=0; confidence=high
Rice	`Os07g0510200` (P0409B11.21-2) - identity=61.4; qcov=0.947; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00332 (Glyco_hydro_17); PF07983 (X8)
InterPro	-
eggNOG	-
NR	GeneID:130985804

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	1.00000	`XP_057764915.1`
2	Cell membrane	细胞膜	0.80000	`XP_057764914.1`
3	Secreted	分泌到胞外	0.40000	`XP_057764915.1`
4	Nucleus	细胞核	0.00000	`XP_057764914.1`
5	Chromosome	染色体	0.00000	`XP_057764914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9141361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,C23,C65
`Chr5:9141772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,A5,C74
`Chr5:9141958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:9143088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:9143224`	`TGC`	`T`	2bp_deletion	frameshift_variant	3	C42,C76,C77
`Chr5:9143224`	`TGC`	`T`	2bp_deletion	CDS_variant	3	C42,C76,C77
`Chr5:9143246`	`CTT`	`C`	2bp_deletion	frameshift_variant	2	C42,C77
`Chr5:9143246`	`CTT`	`C`	2bp_deletion	CDS_variant	2	C42,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764914.1

516 aa

258

516

Glyco_hydro_17

PF00332 Glyco_hydro_17 40-359 aa PF07983 X8 377-448 aa

XP_057764915.1

468 aa

234

468

Glyco_hydro_17

PF00332 Glyco_hydro_17 40-359 aa PF07983 X8 377-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764914.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	40	359	1.1e-68	232.9	Glycosyl hydrolases family 17
`XP_057764914.1`	Pfam	`PF07983`	X8	Domain	377	448	3.3e-22	79.6	X8 domain
`XP_057764915.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	40	359	8.4e-69	233.2	Glycosyl hydrolases family 17
`XP_057764915.1`	Pfam	`PF07983`	X8	Domain	377	448	3.4e-22	79.6	X8 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908932.1
AACTTTACGAACTAAGTTCGATTTCCTCATAATTTTTTACGAGAACATATGATTGTCGGTCCACGAGGTCATTCTCGTCATTTCCAACTCCAAATCAAATCAAATCTACCACACTTCTCCATTTCTCACTGGCTTTCTTTCACTCAACAATGTCGCTCCAAATCATCCCCAAATTGCTAACTCTCTGCAAAAACCCTAATTTGAGCTTCAGCTGACACGGAAGCCAGAGATGATTCAAGGAGCTCCTTCATCTTTTCTGC...

XM_057908931.1
AACTTTACGAACTAAGTTCGATTTCCTCATAATTTTTTACGAGAACATATGATTGTCGGTCCACGAGGTCATTCTCGTCATTTCCAACTCCAAATCAAATCAAATCTACCACACTTCTCCATTTCTCACTGGCTTTCTTTCACTCAACAATGTCGCTCCAAATCATCCCCAAATTGCTAACTCTCTGCAAAAACCCTAATTTGAGCTTCAGCTGACACGGAAGCCAGAGATGATTCAAGGAGCTCCTTCATCTTTTCTGC...

CDS

2 records

下载 CDS FASTA

LOC130985804
ATGGAGAATCACAACAGACTTGCTCACCTCTTCCTTCTCCTCCTGTCTCTAACTGCTCATATCCTGCCCAAATCAGCTTCTGCAGAAATCAAGGCGCAGCAAGACAAAGAGCCTTTCGTGGGGGTGAACATCGGCACGGATGTTTCCAATTCGCTGTCAGCTGCAGATTTAGTTGCTTTTCTGCAGTTGCAGAAGATTACTCATGTGAGACTGTATGATGCAAATGCAGAGATTCTCAAGGCGCTTTCCCGAACCAAGAT...

Protein

2 records

下载 Protein FASTA

XP_057764914.1
MENHNRLAHLFLLLLSLTAHILPKSASAEIKAQQDKEPFVGVNIGTDVSNSLSAADLVAFLQLQKITHVRLYDANAEILKALSRTKIRVIVSVPNNQLLAIGSSNATAATWIGRNVAAFYPQTLITAISVGDEVLTTIPGAAPLLMPAIESLYSALVAANLHTQIKISTPNSASVILDPFPPSQAFFNQSLSPVLTQLLQFLSRTQSPLMMNLYPYYVFMQNKGVVPLANSLFKPLTPSKEMVDPNTLLHYTNVLDAMID...

XP_057764915.1
MENHNRLAHLFLLLLSLTAHILPKSASAEIKAQQDKEPFVGVNIGTDVSNSLSAADLVAFLQLQKITHVRLYDANAEILKALSRTKIRVIVSVPNNQLLAIGSSNATAATWIGRNVAAFYPQTLITAISVGDEVLTTIPGAAPLLMPAIESLYSALVAANLHTQIKISTPNSASVILDPFPPSQAFFNQSLSPVLTQLLQFLSRTQSPLMMNLYPYYVFMQNKGVVPLANSLFKPLTPSKEMVDPNTLLHYTNVLDAMID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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