当前解析结果
SmilChr01G000720| 统一新 Gene ID | SmilChr01G000720 |
|---|---|
| 名称 | SmilChr01G000720 |
| 描述 | uncharacterized SmilChr01G000720 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16117692 - 16118649 / + |
| NCBI Gene ID | LOC130985815 |
|---|---|
| GeneID | 130985815 |
| locus_tag | - |
| NCBI Name | LOC130985815 |
| 原始查询 | LOC130985815 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| 产物 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G18510 (AT5G18510)Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969] identity=24.4; qcov=0.748; evalue=5.65e-06; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF10536 (PMD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985815 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764977.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057764977.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057764977.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057764977.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057764977.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16117696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C75 |
Chr1:16117723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr1:16117735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:16117741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,C55,C8 |
Chr1:16117752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C21,C32,C75 |
Chr1:16117759 |
C |
T |
EMS_canonical_SNV | stop_gained | 114 | A10,A13,A15,A20,A21,A22,A24,A3,A4,A5,A6,A7,A9,B1,B10,B100,B102,B107,B108,B11,B111,B113,B117,B118,B122,B124,B129,B13,B131,B132,B134,B135,B137,B138,B139,B14,B140,B16,B18,B19,B23,B27,B28,B30,B36,B4,B42,B43,B45,B46,B48,B5,B51,B52,B54,B55,B56,B59,B60,B61,B65,B67,B70,B73,B77,B78,B79,B82,B84,B87,B89,B9,B91,B93,B94,B96,C11,C12,C18,C2,C21,C23,C3,C34,C36,C38,C39,C4,C40,C45,C46,C49,C5,C50,C53,C55,C58,C60,C62,C69,C7,C72,C75,C77,C78,C79,C80,C81,C84,C85,D4,D5,D7,D8 |
Chr1:16117784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B75 |
Chr1:16117786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B91 |
Chr1:16117791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B42,B43,C50,D10 |
Chr1:16117822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,C27,C41,C71 |
Chr1:16117839 |
G |
A |
EMS_canonical_SNV | stop_gained | 43 | A1,A11,A3,B1,B104,B109,B11,B114,B121,B124,B127,B128,B134,B139,B17,B19,B22,B36,B41,B44,B50,B53,B68,B85,B94,C10,C14,C23,C24,C29,C31,C41,C48,C6,C60,C62,C75,C79,C81,C82,C85,D3,D6 |
Chr1:16117854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764977.1PF10536
PMD 4-214 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764977.1 |
Pfam | PF10536 |
PMD | Domain | 4 | 214 | 2.5e-10 | 40.8 | Plant mobile domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。