Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001139`

染色体: Chr05 坐标: 9506583-9511966 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001139`
名称	SmilChr05G001139
描述	O-fucosyltransferase 15-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9506583 - 9511966 / `-`

ID 对照

NCBI Gene ID	`LOC130985839`
GeneID	`130985839`
locus_tag	`-`
NCBI Name	`LOC130985839`
原始查询	`LOC130985839`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	O-fucosyltransferase 15-like
产物	O-fucosyltransferase 15-like
Arabidopsis	`AT1G62330` (AT1G62330) O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842531] identity=70.8; qcov=0.96; evalue=0; confidence=high
Rice	`Os06g0545900` - identity=57.3; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF10250 (O-FucT)
InterPro	-
eggNOG	-
NR	GeneID:130985839

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057764972.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057764972.1`
3	Nucleus	细胞核	0.00000	`XP_057764974.1`
4	Chromosome	染色体	0.00000	`XP_057764974.1`
5	Centromere	着丝粒	0.00000	`XP_057764974.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9506953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:9507232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr5:9507237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,C76
`Chr5:9507303`	`A`	`AGG`	2bp_insertion	frameshift_variant	88	A19,A20,A21,A22,A23,A4,A5,B1,B10,B101,B104,B108,B109,B111,B114,B117,B119,B12,B125,B127,B128,B13,B130,B131,B134,B136,B138,B17,B21,B25,B26,B31,B34,B35,B36,B40,B46,B47,B49,B56,B57,B64,B65,B7,B70,B71,B72,B75,B77,B80,B84,B85,B86,B89,B91,B96,B98,C10,C11,C13,C18,C19,C20,C3,C34,C37,C4,C40,C41,C42,C44,C45,C49,C5,C51,C58,C60,C61,C65,C69,C73,C8,C80,D2,D4,D5,D7,D9
`Chr5:9507426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:9508019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B137,B55,B80,C49
`Chr5:9508043`	`TTG`	`T`	2bp_deletion	frameshift_variant	57	A14,A24,A5,A7,B10,B101,B104,B110,B120,B123,B126,B128,B133,B20,B26,B28,B29,B30,B35,B45,B46,B57,B58,B64,B67,B8,B82,B84,B89,B94,C12,C19,C27,C33,C35,C39,C40,C41,C44,C45,C49,C5,C53,C58,C64,C65,C66,C70,C72,C74,C81,C82,C9,D3,D4,D7,D8
`Chr5:9508067`	`G`	`GAT`	2bp_insertion	frameshift_variant	13	A3,B1,B100,B119,B22,B34,B44,B48,B58,B98,C25,C71,C80
`Chr5:9508443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:9508627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr5:9509230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr5:9509660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B37,B8,B94,C46,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764972.1

617 aa

308

617

O-FucT

PF10250 O-FucT 189-550 aa

XP_057764973.1

616 aa

308

616

O-FucT

PF10250 O-FucT 189-549 aa

XP_057764974.1

499 aa

250

499

O-FucT

PF10250 O-FucT 71-432 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764972.1`	Pfam	`PF10250`	O-FucT	Family	189	550	9.4e-96	322.2	GDP-fucose protein O-fucosyltransferase
`XP_057764973.1`	Pfam	`PF10250`	O-FucT	Family	189	549	7.8e-96	322.4	GDP-fucose protein O-fucosyltransferase
`XP_057764974.1`	Pfam	`PF10250`	O-FucT	Family	71	432	5.4e-96	322.9	GDP-fucose protein O-fucosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908990.1
GAGTACGAGTGGACTCGTTTTGTGATGTCAACGAAACGACATGGCAGCGTCTTGCTGTGAAATATGAAATGAAAATCAACAAGACAAGAATTTCAACAATAAACAGAAAAGATTCTCTCTGTGTTGCATCTGAAATCCCTCTCGCACCCTTTCTCTTCCTCGCCACCGCTATTCTATTTGTTCGATTTTCAATGTGCGTTGTGATTGGAATGACATGCTTTTAGTGTTGGACGTGCGCATTGCAGTCTCATTGGCTGATT...

XM_057908989.1
TGTGATGTCAACGAAACGACATGGCAGCGTCTTGCTGTGAAATATGAAATGAAAATCAACAAGACAAGAATTTCAACAATAAACAGAAAAGATTCTCTCTGTGTTGCATCTGAAATCCCTCTCGCACCCTTTCTCTTCCTCGCCACCGCTATTCTATTTGTTCGATTTTCAATGTGCGTTGTGATTGGAATGACATGCTTTTAGTGTTGGACGTGCGCATTGCAGTCTCATTGGCTGATTTTTGGTTTTTGTTGGCTACT...

CDS

3 records

下载 CDS FASTA

LOC130985839
ATGTCTTATCCCAATTCGGCCCAAATCAACGTAGTTGACGCCGATGAAGATAGTGGAAAGGATTTCGGGCAATGGATTTACGGCCGGAATTCGATCAGCTCGAGGATGAGCCAATCTTCACCCAGAGATTCGTTGGGATCGCCCTCACAATTATCGCCGAACGGCTATTTTGAGCACAAGAAAACGAAGAAATCCAAGAGAACTGCGTGGTACATGAAAAAGACCACGTTTGTATTAGGGGTGTTGGTGGCATTCTTCTT...

Protein

3 records

下载 Protein FASTA

XP_057764972.1
MSYPNSAQINVVDADEDSGKDFGQWIYGRNSISSRMSQSSPRDSLGSPSQLSPNGYFEHKKTKKSKRTAWYMKKTTFVLGVLVAFFFLVNLSMLRRVQEPGRGNINIKPLKANATTVFIREELQKLGRGKKPQKTIYARLLAKAAHALAEGESKTEPKDLWVEPYTRASSWIPCSHTRNWEPSEGTSGFIMVTANGGINQQRVAVCNAVAIARMLNATLVLPRFMFSSVWRDASQFGDIYQEDYFINYLKPDIRIIKELP...

XP_057764973.1
MSYPNSAQINVVDADEDSGKDFGQWIYGRNSISSRMSQSSPRDSLGSPSQLSPNGYFEHKKTKKSKRTAWYMKKTTFVLGVLVAFFFLVNLSMLRRVQEPGRGNINIKPLKANATTVFIREELQKLGRGKKPQKTIYARLLAKAAHALAEGESKTEPKDLWVEPYTRASSWIPCSHTRNWEPSEGTSGFIMVTANGGINQQRVAVCNAVAIARMLNATLVLPRFMFSSVWRDASQFGDIYQEDYFINYLKPDIRIIKELP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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